Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 SNORA7.4-201ENST00000384249 137 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 MIR514A1-201ENST00000385133 98 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 BTF3L4P3-201ENST00000418879 476 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC000111.3-201ENST00000433478 193 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC244505.4-201ENST00000434905 287 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AL353572.1-201ENST00000442490 417 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 SSXP5-201ENST00000443473 287 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 DDX3P2-201ENST00000446138 111 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 MTND4P18-201ENST00000447010 465 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 CACYBPP2-201ENST00000453625 678 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 RNU7-182P-201ENST00000459009 62 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC083798.1-201ENST00000472671 131 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC108078.2-201ENST00000510750 236 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AL359273.1-201ENST00000510918 627 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 SNORD27.1-201ENST00000516319 72 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC134698.4-201ENST00000523451 826 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 HIF1AP1-201ENST00000553642 175 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 RPL23AP84-201ENST00000571193 464 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 MIR5004-201ENST00000579078 107 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC024619.4-201ENST00000580924 316 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 BDH2P1-201ENST00000602288 736 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 YPEL5P2-201ENST00000605553 359 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC002553.4-201ENST00000616896 331 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 YWHAEP7-203ENST00000622054 312 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AC099506.2-201ENST00000623074 221 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 AL355596.1-201ENST00000565399 3996 ntBASIC3.16□□□□□ -1.9
PCDH9Q9HC56 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
PCDH9Q9HC56 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.15□□□□□ -1.9
PCDH9Q9HC56 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
PCDH9Q9HC56 AL353743.1-202ENST00000431724 1695 ntBASIC3.15□□□□□ -1.9
PCDH9Q9HC56 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 NACAP2-201ENST00000318548 624 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC073325.2-201ENST00000339545 159 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 RNU6-534P-201ENST00000364877 106 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 RNU6-996P-201ENST00000365438 107 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 SNORD15B-201ENST00000384714 146 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 RNU6-606P-201ENST00000384721 111 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 UBE2V1P2-201ENST00000397758 440 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 USP9YP6-201ENST00000413550 854 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC009969.1-201ENST00000438726 172 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 MTND4P25-201ENST00000441039 533 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC020550.1-201ENST00000447385 163 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 DPPA3P1-201ENST00000448050 469 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 MTND1P18-201ENST00000448191 573 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AL162395.1-201ENST00000457882 422 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 RPL31P58-201ENST00000469001 379 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 RN7SL633P-201ENST00000488974 297 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 SNORA40.12-201ENST00000516329 111 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 RNU6-1178P-201ENST00000516674 107 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 MIR4775-201ENST00000581168 75 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 UBL5P2-201ENST00000583788 219 ntBASIC3.15□□□□□ -1.91
PCDH9Q9HC56 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PCDH9Q9HC56 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PCDH9Q9HC56 AC093908.1-201ENST00000623125 8092 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDH9Q9HC56 AC006020.1-201ENST00000420179 1854 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 SNORA51.4-201ENST00000364993 124 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 RNU6-61P-201ENST00000365528 109 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 RNU6-1029P-201ENST00000384109 107 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 SNORD37.1-201ENST00000390968 65 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 RNU6-1068P-201ENST00000410958 103 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.14□□□□□ -1.91
PCDH9Q9HC56 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.14□□□□□ -1.91
PCDH9Q9HC56 AL451054.2-201ENST00000420896 202 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.14□□□□□ -1.91
PCDH9Q9HC56 SEPT14P3-201ENST00000439401 183 ntBASIC3.14□□□□□ -1.91
PCDH9Q9HC56 AL732372.2-207ENST00000445840 183 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms