Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RN7SL52P-201ENST00000584271 284 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC073410.2-201ENST00000603240 332 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC012603.1-201ENST00000606424 528 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC004792.1-201ENST00000614523 137 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 AC091903.1-201ENST00000624322 454 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 U6.92-201ENST00000636464 89 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RLIMP1-201ENST00000339626 1680 ntBASIC4.34□□□□□ -1.71
UBE3DQ7Z6J8 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.72
UBE3DQ7Z6J8 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
UBE3DQ7Z6J8 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 snoU2_19.2-201ENST00000363024 80 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 U3.6-201ENST00000363622 211 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 SNORD113.2-201ENST00000364166 89 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.297-201ENST00000364950 91 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 RNA5SP235-201ENST00000365411 114 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-708P-201ENST00000384217 107 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.581-201ENST00000391017 97 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 RNU2-14P-201ENST00000411053 191 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 RPL23AP25-201ENST00000430973 463 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 AC011753.3-201ENST00000443436 406 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 AC124916.1-201ENST00000444020 547 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 PTMAP3-201ENST00000447474 330 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 AC098869.1-201ENST00000481627 292 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 NIP7P2-201ENST00000485801 544 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 ANXA2P1-201ENST00000505539 926 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-377P-201ENST00000515965 102 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-1338P-201ENST00000516328 91 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 SNORA31.20-201ENST00000517111 133 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 AP006289.1-201ENST00000538089 277 ntBASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
UBE3DQ7Z6J8 MAPK10-263ENST00000641052 4307 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 CPHL1P-201ENST00000461341 3407 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-335P-201ENST00000364563 113 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.358-201ENST00000365491 99 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AL603910.2-201ENST00000407268 136 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 CYP4F29P-201ENST00000420685 446 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 TMEM167AP1-201ENST00000423409 219 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC079780.1-201ENST00000428259 207 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 RPL23AP93-201ENST00000440847 484 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC073264.2-201ENST00000448886 166 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 RN7SL354P-201ENST00000469282 294 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 SNORA31.19-201ENST00000517079 126 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC025755.1-201ENST00000521306 278 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 CASP1P1-201ENST00000526345 212 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AP001781.1-201ENST00000530977 207 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC010186.2-204ENST00000537668 439 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC091178.1-203ENST00000584586 279 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AP002826.1-201ENST00000608835 315 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 SCARNA4-202ENST00000625402 129 ntBASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
UBE3DQ7Z6J8 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 Y_RNA.200-201ENST00000364018 102 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 SNORA71.2-201ENST00000364941 134 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 RNU5E-7P-201ENST00000365290 117 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-378P-201ENST00000384324 107 ntBASIC4.31□□□□□ -1.72
UBE3DQ7Z6J8 RNU6-166P-201ENST00000384371 107 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 204 ms