Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MORN2-203ENST00000409131 544 ntTSL 5 BASIC0.66□□□□□ -2.3
USF3Q68DE3 AL109913.1-201ENST00000421173 514 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 RPL27AP8-201ENST00000424277 446 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 AC092047.1-201ENST00000424997 240 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC0.66□□□□□ -2.3
USF3Q68DE3 DUXAP8-207ENST00000456786 622 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 RPL31P41-201ENST00000477967 372 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 RNA5SP476-201ENST00000516613 103 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.66□□□□□ -2.3
USF3Q68DE3 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.66□□□□□ -2.3
USF3Q68DE3 AL133241.1-201ENST00000556832 487 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.66□□□□□ -2.3
USF3Q68DE3 AC005498.1-201ENST00000592125 465 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
USF3Q68DE3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
USF3Q68DE3 AC016716.1-201ENST00000265882 708 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 RNU6-1328P-201ENST00000410938 106 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.66□□□□□ -2.3
USF3Q68DE3 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.66□□□□□ -2.3
USF3Q68DE3 MTCYBP3-201ENST00000445588 1137 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 AC117454.1-201ENST00000491120 168 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 AC139453.3-201ENST00000493276 369 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 SNORA31.13-201ENST00000516624 135 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC0.66□□□□□ -2.3
USF3Q68DE3 EEF1B2P4-201ENST00000551398 348 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC0.66□□□□□ -2.3
USF3Q68DE3 AC010615.3-201ENST00000597319 394 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 AC090116.1-201ENST00000615679 446 ntBASIC0.66□□□□□ -2.3
USF3Q68DE3 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.3
USF3Q68DE3 SNORA70.7-201ENST00000384159 133 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 RNA5SP56-201ENST00000410277 118 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 UBE2V1P9-201ENST00000414760 368 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 JTBP1-201ENST00000441314 247 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 RPL39P29-201ENST00000447779 157 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.65□□□□□ -2.3
USF3Q68DE3 RPS20P24-201ENST00000457473 361 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 snoU109.1-201ENST00000459339 135 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 RNU7-23P-201ENST00000459465 62 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.65□□□□□ -2.3
USF3Q68DE3 AC112518.2-201ENST00000508565 425 ntBASIC0.65□□□□□ -2.3
USF3Q68DE3 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.65□□□□□ -2.3
USF3Q68DE3 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.65□□□□□ -2.3
USF3Q68DE3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.65□□□□□ -2.31
USF3Q68DE3 RNU4-23P-201ENST00000362839 140 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AL356432.1-201ENST00000405809 419 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC244636.1-201ENST00000421152 228 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 RPL36P19-201ENST00000430744 301 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC024082.2-201ENST00000434771 238 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.65□□□□□ -2.31
USF3Q68DE3 AC087884.1-201ENST00000469738 328 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
USF3Q68DE3 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.65□□□□□ -2.31
USF3Q68DE3 AC113398.2-201ENST00000507630 558 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC108078.1-201ENST00000508073 725 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 TPT1P8-201ENST00000510120 555 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 FAM206BP-201ENST00000510179 541 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC022447.1-201ENST00000515358 464 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC0.65□□□□□ -2.31
USF3Q68DE3 OR5AK1P-201ENST00000524837 922 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.65□□□□□ -2.31
USF3Q68DE3 AL049870.4-201ENST00000555741 486 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.65□□□□□ -2.31
USF3Q68DE3 AL078605.1-201ENST00000603529 500 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AL355877.2-201ENST00000603670 358 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC005034.5-201ENST00000604219 466 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC013468.1-201ENST00000608680 598 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 AC103710.4-201ENST00000609301 899 ntBASIC0.65□□□□□ -2.31
USF3Q68DE3 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.64□□□□□ -2.31
USF3Q68DE3 RNU6-1235P-201ENST00000384559 107 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC0.64□□□□□ -2.31
USF3Q68DE3 RNU6-498P-201ENST00000459468 107 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AC092757.1-201ENST00000467293 467 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 MTND4LP3-201ENST00000468320 276 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AC091965.2-201ENST00000512324 613 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.64□□□□□ -2.31
USF3Q68DE3 RNA5SP121-201ENST00000516537 101 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 RNU7-193P-201ENST00000516723 65 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 RNU6-798P-201ENST00000516912 103 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.64□□□□□ -2.31
USF3Q68DE3 DUXAP1-201ENST00000556632 463 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AC005786.1-201ENST00000588553 154 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AC103810.8-201ENST00000607347 118 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 DUXAP10-204ENST00000612052 616 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 DUSP12P1-201ENST00000612874 516 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AP003485.1-201ENST00000625093 753 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
USF3Q68DE3 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC0.64□□□□□ -2.31
USF3Q68DE3 Y_RNA.68-201ENST00000362881 102 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AL139397.2-201ENST00000404529 772 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AL714022.1-201ENST00000439897 151 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.64□□□□□ -2.31
USF3Q68DE3 OR2A41P-201ENST00000473586 105 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AC116337.2-201ENST00000477662 156 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms