Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC253576.2-201ENST00000618815 580 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 AL590396.4-201ENST00000636779 956 ntBASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
CCDC88AQ3V6T2 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 SNORA3A-201ENST00000364113 130 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 MTCYBP3-201ENST00000445588 1137 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC027338.1-201ENST00000514840 825 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 SNORA31.25-201ENST00000517242 134 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 DUXAP5-201ENST00000529668 529 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 MTND4LP5-201ENST00000605152 292 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC100814.1-201ENST00000606963 623 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 uc_338.14-201ENST00000613162 166 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AL157770.1-201ENST00000623049 439 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AP000560.1-201ENST00000624150 1937 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 SNORD116-23-201ENST00000384645 92 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 RNU2-28P-201ENST00000410457 189 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 PSMA6P3-201ENST00000428242 164 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC114878.1-201ENST00000441166 358 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 RNFT1P2-201ENST00000443064 757 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 PSPHP1-201ENST00000450062 261 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC005297.2-201ENST00000450430 606 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC093801.2-201ENST00000503966 1050 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 RN7SKP265-201ENST00000516448 223 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 SNORA31.18-201ENST00000517043 134 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AP000907.2-201ENST00000530827 353 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 LINC00557-201ENST00000563184 1279 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC078899.2-201ENST00000595282 212 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AL391646.1-201ENST00000603860 190 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 AC006338.1-201ENST00000618453 749 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 MTND1P37-201ENST00000636562 264 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 U2.21-201ENST00000637295 81 ntBASIC1.56□□□□□ -2.16
CCDC88AQ3V6T2 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 MTND1P21-201ENST00000412991 285 ntBASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 AL049734.2-201ENST00000441066 616 ntBASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 EIF4EP3-201ENST00000498782 656 ntBASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 SNORA48.10-201ENST00000516965 160 ntBASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 AC084364.2-201ENST00000546924 395 ntBASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 DUXAP1-201ENST00000556632 463 ntBASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 AC011712.1-201ENST00000588959 234 ntBASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC88AQ3V6T2 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 MIR222-201ENST00000384992 110 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AL445669.1-201ENST00000426743 755 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC092573.2-201ENST00000434546 243 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AL096803.2-201ENST00000450032 677 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 RPS20P20-201ENST00000460498 340 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AL049714.1-201ENST00000466686 347 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 MTND4LP3-201ENST00000468320 276 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 FO393415.2-201ENST00000480085 343 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 RPS3AP22-201ENST00000488297 769 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 SCARNA15.2-201ENST00000516409 127 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC068338.1-201ENST00000565567 176 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AP001269.3-201ENST00000588718 329 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AL096840.1-201ENST00000603287 93 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 MTND4P21-201ENST00000453886 1357 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 SUGT1P1-201ENST00000379514 476 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-220P-201ENST00000390919 107 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 RNU6-754P-201ENST00000391166 107 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 MTCO3P1-205ENST00000422088 832 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 NANOGP2-201ENST00000435391 727 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 GPM6BP3-201ENST00000442797 145 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 RPL39P6-201ENST00000448289 150 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 SNRPFP3-201ENST00000457792 225 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms