Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC084783.1-201ENST00000565846 910 ntBASIC3.88□□□□□ -1.79
MSX2P35548 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.88□□□□□ -1.79
MSX2P35548 AC234771.5-201ENST00000600161 514 ntBASIC3.88□□□□□ -1.79
MSX2P35548 AC113403.1-201ENST00000604910 193 ntBASIC3.88□□□□□ -1.79
MSX2P35548 ELOCP5-201ENST00000604924 333 ntBASIC3.88□□□□□ -1.79
MSX2P35548 SDR42E1P2-201ENST00000614861 481 ntBASIC3.88□□□□□ -1.79
MSX2P35548 AP005019.3-201ENST00000620418 560 ntBASIC3.88□□□□□ -1.79
MSX2P35548 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.88□□□□□ -1.79
MSX2P35548 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.88□□□□□ -1.79
MSX2P35548 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSX2P35548 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
MSX2P35548 NCAPGP1-201ENST00000505112 1814 ntBASIC3.88□□□□□ -1.79
MSX2P35548 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSX2P35548 USP8P1-201ENST00000494673 3183 ntBASIC3.88□□□□□ -1.79
MSX2P35548 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSX2P35548 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
MSX2P35548 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
MSX2P35548 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.87□□□□□ -1.79
MSX2P35548 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.87□□□□□ -1.79
MSX2P35548 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.87□□□□□ -1.79
MSX2P35548 MFSD8-216ENST00000641147 4009 ntBASIC3.87□□□□□ -1.79
MSX2P35548 RNU6-99P-201ENST00000364721 107 ntBASIC3.87□□□□□ -1.79
MSX2P35548 RNA5SP505-201ENST00000364748 108 ntBASIC3.87□□□□□ -1.79
MSX2P35548 RNU6-1181P-201ENST00000384191 106 ntBASIC3.87□□□□□ -1.79
MSX2P35548 RNU2-23P-201ENST00000410545 195 ntBASIC3.87□□□□□ -1.79
MSX2P35548 RPEP3-201ENST00000425462 676 ntBASIC3.87□□□□□ -1.79
MSX2P35548 AC073063.1-201ENST00000434352 607 ntBASIC3.87□□□□□ -1.79
MSX2P35548 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.87□□□□□ -1.79
MSX2P35548 RNU7-138P-201ENST00000459479 64 ntBASIC3.87□□□□□ -1.79
MSX2P35548 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.87□□□□□ -1.79
MSX2P35548 AC146944.2-203ENST00000502493 354 ntBASIC3.87□□□□□ -1.79
MSX2P35548 AC139495.1-202ENST00000513164 354 ntBASIC3.87□□□□□ -1.79
MSX2P35548 RNA5SP519-201ENST00000516480 119 ntBASIC3.87□□□□□ -1.79
MSX2P35548 RNU6-307P-201ENST00000516743 106 ntBASIC3.87□□□□□ -1.79
MSX2P35548 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.87□□□□□ -1.79
MSX2P35548 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSX2P35548 AC005899.2-201ENST00000584353 90 ntBASIC3.87□□□□□ -1.79
MSX2P35548 MIR15A-201ENST00000607334 83 ntBASIC3.87□□□□□ -1.79
MSX2P35548 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.87□□□□□ -1.79
MSX2P35548 AL606534.2-204ENST00000635008 178 ntBASIC3.87□□□□□ -1.79
MSX2P35548 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
MSX2P35548 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.87□□□□□ -1.79
MSX2P35548 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
MSX2P35548 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSX2P35548 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
MSX2P35548 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.86□□□□□ -1.79
MSX2P35548 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
MSX2P35548 RNU6-1329P-201ENST00000365664 107 ntBASIC3.86□□□□□ -1.79
MSX2P35548 Y_RNA.480-201ENST00000384364 102 ntBASIC3.86□□□□□ -1.79
MSX2P35548 RNU6-1026P-201ENST00000384465 108 ntBASIC3.86□□□□□ -1.79
MSX2P35548 Y_RNA.512-201ENST00000384518 102 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC096664.2-201ENST00000411843 406 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC119751.6-201ENST00000416712 186 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AL158071.1-201ENST00000430315 461 ntBASIC3.86□□□□□ -1.79
MSX2P35548 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.86□□□□□ -1.79
MSX2P35548 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.86□□□□□ -1.79
MSX2P35548 AC099799.1-201ENST00000439809 192 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC011816.1-201ENST00000441346 546 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.86□□□□□ -1.79
MSX2P35548 HSFY6P-201ENST00000445573 403 ntBASIC3.86□□□□□ -1.79
MSX2P35548 FTH1P25-201ENST00000447665 469 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC073264.2-201ENST00000448886 166 ntBASIC3.86□□□□□ -1.79
MSX2P35548 TPT1P12-201ENST00000448968 492 ntBASIC3.86□□□□□ -1.79
MSX2P35548 RNU6-953P-201ENST00000459154 107 ntBASIC3.86□□□□□ -1.79
MSX2P35548 RPL31P60-201ENST00000478450 367 ntBASIC3.86□□□□□ -1.79
MSX2P35548 RPL22P13-201ENST00000493291 347 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.86□□□□□ -1.79
MSX2P35548 OR5D17P-201ENST00000531492 978 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.86□□□□□ -1.79
MSX2P35548 SUB1P3-201ENST00000564581 315 ntBASIC3.86□□□□□ -1.79
MSX2P35548 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
MSX2P35548 AC100812.1-201ENST00000607622 580 ntBASIC3.86□□□□□ -1.79
MSX2P35548 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 MIR4275-201ENST00000636486 87 ntBASIC3.86□□□□□ -1.79
MSX2P35548 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.86□□□□□ -1.79
MSX2P35548 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
MSX2P35548 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX2P35548 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
MSX2P35548 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.85□□□□□ -1.79
MSX2P35548 AL353746.1-201ENST00000566293 6881 ntBASIC3.85□□□□□ -1.79
MSX2P35548 RNU1-14P-201ENST00000362759 152 ntBASIC3.85□□□□□ -1.79
MSX2P35548 Y_RNA.106-201ENST00000363189 100 ntBASIC3.85□□□□□ -1.79
MSX2P35548 Y_RNA.151-201ENST00000363566 112 ntBASIC3.85□□□□□ -1.79
MSX2P35548 SNORD35B-201ENST00000363660 87 ntBASIC3.85□□□□□ -1.79
MSX2P35548 Y_RNA.307-201ENST00000365022 117 ntBASIC3.85□□□□□ -1.79
MSX2P35548 SNORA62-201ENST00000365493 153 ntBASIC3.85□□□□□ -1.79
MSX2P35548 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
MSX2P35548 DEFB109C-201ENST00000382575 264 ntBASIC3.85□□□□□ -1.79
MSX2P35548 DEFB109B-201ENST00000382656 264 ntBASIC3.85□□□□□ -1.79
MSX2P35548 MIR517A-201ENST00000385001 87 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms