Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC009901.1-201ENST00000506703 541 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 HMGN1P11-201ENST00000508668 303 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4BO75351 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.71□□□□□ -1.82
VPS4BO75351 RNU1-95P-201ENST00000516357 160 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 SNORA70.16-201ENST00000516390 95 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 RNA5SP164-201ENST00000516533 110 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 RNU1-128P-201ENST00000516704 160 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 RNU6-1073P-201ENST00000517182 106 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 CBX3P7-201ENST00000532876 502 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4BO75351 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4BO75351 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4BO75351 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4BO75351 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS4BO75351 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4BO75351 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4BO75351 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4BO75351 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4BO75351 U2.17-201ENST00000611454 95 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 AC022418.1-201ENST00000624118 445 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4BO75351 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS4BO75351 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4BO75351 MTND5P1-201ENST00000445440 1375 ntBASIC3.71□□□□□ -1.82
VPS4BO75351 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
VPS4BO75351 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4BO75351 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS4BO75351 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS4BO75351 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
VPS4BO75351 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4BO75351 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
VPS4BO75351 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4BO75351 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.7□□□□□ -1.82
VPS4BO75351 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4BO75351 RNU6-213P-201ENST00000384051 104 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 MIR30B-201ENST00000384850 88 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RNA5SP219-201ENST00000390940 113 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4BO75351 Z92545.1-201ENST00000411782 234 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RPS29P4-201ENST00000414733 161 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RPLP0P7-201ENST00000416050 667 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4BO75351 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS4BO75351 BX842559.1-201ENST00000419615 532 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 AL159169.1-201ENST00000421119 127 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RPL27AP8-201ENST00000424277 446 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 SAR1AP4-201ENST00000429225 591 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4BO75351 RPL21P41-201ENST00000459863 264 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RPL37P6-201ENST00000460682 294 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RPL7P43-201ENST00000478876 753 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 PPIAP15-201ENST00000479662 484 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RN7SL323P-201ENST00000494712 295 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RPL7P47-201ENST00000497299 556 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 HMGN1P13-201ENST00000505795 138 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 SNORA14.1-201ENST00000516113 141 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RNU6-1069P-201ENST00000516612 133 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RNU6-1088P-201ENST00000516850 104 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4BO75351 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4BO75351 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4BO75351 AC004024.1-201ENST00000549244 247 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS4BO75351 AC106782.4-201ENST00000568264 210 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS4BO75351 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS4BO75351 MIR3672-201ENST00000584290 82 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 POLR3GP2-201ENST00000588366 668 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 uc_338.15-201ENST00000615470 191 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
VPS4BO75351 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4BO75351 AC006504.1-201ENST00000562493 3666 ntBASIC3.7□□□□□ -1.82
VPS4BO75351 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4BO75351 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS4BO75351 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
VPS4BO75351 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4BO75351 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4BO75351 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4BO75351 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4BO75351 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS4BO75351 UBE2L2-201ENST00000254302 429 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 Y_RNA.135-201ENST00000363439 95 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 RNA5SP97-201ENST00000365006 84 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 SNORA5A-201ENST00000384111 134 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 NDUFB4P4-201ENST00000404822 243 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 MIR548K-201ENST00000408406 116 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS4BO75351 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS4BO75351 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS4BO75351 HMGN2P31-201ENST00000432430 273 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 HSPD1P21-201ENST00000436541 245 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS4BO75351 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS4BO75351 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS4BO75351 SNORA59A-201ENST00000459326 152 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS4BO75351 SUMO2P6-201ENST00000505273 288 ntBASIC3.69□□□□□ -1.82
VPS4BO75351 Y_RNA.701-201ENST00000516812 110 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms