Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 AC083843.3-201ENST00000623679 2186 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.117-201ENST00000363294 101 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.324-201ENST00000365165 102 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-76P-201ENST00000384060 104 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-882P-201ENST00000391025 103 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-1093P-201ENST00000391194 107 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 MIR1911-201ENST00000410783 80 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 AL592045.1-201ENST00000429867 352 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 COX6B1P7-201ENST00000430845 235 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 HMGB1P27-201ENST00000431429 603 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 FCF1P4-201ENST00000448326 183 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 RNU7-4P-201ENST00000516961 62 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-111P-201ENST00000517179 105 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 SARNP-203ENST00000552080 726 ntTSL 2 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 AC012433.1-201ENST00000588916 398 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 AC137590.2-201ENST00000619709 240 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 Z73965.1-201ENST00000623412 2297 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 AC005183.1-201ENST00000603687 1979 ntBASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
CHMP3Q9Y3E7 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 RNA5SP515-201ENST00000364570 118 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-1179P-201ENST00000384667 107 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AL022722.2-201ENST00000402519 180 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 SNORA74C-2-201ENST00000411179 201 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 RPL21P38-201ENST00000418090 167 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AL353621.1-201ENST00000418219 243 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 RPL17P36-201ENST00000420302 549 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AL132765.1-201ENST00000434165 553 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AL590399.6-201ENST00000446396 307 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AC108022.1-201ENST00000493466 478 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 RN7SKP40-201ENST00000517211 242 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AC008694.2-201ENST00000517591 306 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AC004584.2-201ENST00000570407 410 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 AC130454.1-201ENST00000622948 401 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 Z99571.1-201ENST00000636677 394 ntBASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CHMP3Q9Y3E7 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.56
CHMP3Q9Y3E7 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.56
CHMP3Q9Y3E7 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CHMP3Q9Y3E7 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 SNORA70E-201ENST00000384492 135 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 MIR625-201ENST00000385047 85 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 AL513475.1-201ENST00000406602 315 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 RNA5SP317-201ENST00000410176 116 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 RN7SKP167-201ENST00000411047 285 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 RNA5SP311-201ENST00000411290 116 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 RAC1P3-201ENST00000416129 580 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 LINC01399-202ENST00000458450 244 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 GMPSP1-201ENST00000514075 579 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 RNA5SP315-201ENST00000516340 116 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 RNA5SP312-201ENST00000517068 116 ntBASIC5.33□□□□□ -1.56
CHMP3Q9Y3E7 AP003733.2-201ENST00000529409 171 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms