Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RNU6-101P-201ENST00000410323 104 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 HMGB3P11-201ENST00000440127 604 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 snoU13.8-201ENST00000458890 104 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 RPL39P38-201ENST00000467018 153 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AC097473.1-201ENST00000508142 408 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AC022616.3-201ENST00000523940 148 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 SETP7-201ENST00000552169 453 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AL358913.1-201ENST00000554342 121 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AC068790.3-201ENST00000602988 553 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 IGHV3-29-201ENST00000604817 344 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AC012409.4-201ENST00000612923 249 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 AC093535.2-201ENST00000624769 2326 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 UBE3AP2-201ENST00000429033 2259 ntBASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL17A1Q9UMD9 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 RNU6-823P-201ENST00000391042 103 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 RPL21P24-201ENST00000413752 448 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AL121890.1-201ENST00000435457 205 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AP000936.3-201ENST00000438127 255 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AC093156.1-201ENST00000440382 670 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AC114801.2-201ENST00000503825 781 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 IGKV2D-23-201ENST00000518179 286 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AC022559.1-201ENST00000520905 205 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AC131281.1-201ENST00000522984 164 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AC018442.3-201ENST00000523025 183 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AP001804.3-201ENST00000525146 880 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 HMGB3P26-201ENST00000560051 582 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 MIR4276-201ENST00000584832 70 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 PSMA6P4-201ENST00000603247 718 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AL670379.11-201ENST00000604059 253 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AL670379.10-201ENST00000604330 253 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AL670379.12-201ENST00000605291 253 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 AL670379.9-201ENST00000605428 253 ntBASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL17A1Q9UMD9 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL17A1Q9UMD9 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL17A1Q9UMD9 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
COL17A1Q9UMD9 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL17A1Q9UMD9 AC092079.1-201ENST00000558620 1985 ntBASIC5.4□□□□□ -1.55
COL17A1Q9UMD9 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 SNORD37.1-201ENST00000390968 65 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 RNU6-1140P-201ENST00000410517 106 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 UBE2V1P13-201ENST00000436983 439 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AL356010.1-201ENST00000456364 102 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 RNU6-1212P-201ENST00000517023 104 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 IMMP1LP2-201ENST00000552954 492 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC090615.1-201ENST00000577519 154 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AL031176.1-201ENST00000604554 466 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC091812.1-201ENST00000432235 1948 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 ZNF826P-207ENST00000622273 1910 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 LINC01109-201ENST00000603837 3081 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 SNORD50.1-201ENST00000362987 71 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 SNORD74.4-201ENST00000364129 80 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.485-201ENST00000384395 102 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 Y_RNA.562-201ENST00000384695 113 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 RNU2-23P-201ENST00000410545 195 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 UBE2FP1-201ENST00000416536 447 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC092832.1-201ENST00000422934 400 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC108734.1-201ENST00000439549 399 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AL163973.1-201ENST00000484753 577 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC090572.1-201ENST00000519251 160 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC107934.1-201ENST00000522215 217 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC130289.1-201ENST00000577321 73 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 MIR4504-201ENST00000577413 92 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 MIR4790-201ENST00000577799 79 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 PISRT1.1-201ENST00000616930 107 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 AC103858.2-201ENST00000621471 543 ntBASIC5.39□□□□□ -1.55
COL17A1Q9UMD9 PLCE1P1-201ENST00000622094 305 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms