Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.32□□□□□ -1.88
NPAS1Q99742 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
NPAS1Q99742 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NPAS1Q99742 FTLP6-201ENST00000355274 422 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 RNA5SP295-201ENST00000362655 121 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 RNU6-395P-201ENST00000365662 106 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 SNORA5A-201ENST00000384111 134 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 RNU6-45P-201ENST00000384471 107 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 RNU6-1127P-201ENST00000384580 107 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
NPAS1Q99742 RNA5SP219-201ENST00000390940 113 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AL162578.1-201ENST00000406202 378 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 Y_RNA.615-201ENST00000410769 117 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC092047.1-201ENST00000424997 240 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC018644.1-201ENST00000429934 551 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC007389.2-201ENST00000434630 306 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.31□□□□□ -1.88
NPAS1Q99742 SETP5-201ENST00000437270 562 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.31□□□□□ -1.88
NPAS1Q99742 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 RPS15AP27-201ENST00000449183 343 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 SSXP4-201ENST00000451349 245 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 FABP5P15-201ENST00000453566 214 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 RPS29P25-201ENST00000481709 171 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.31□□□□□ -1.88
NPAS1Q99742 AC114786.4-201ENST00000508771 728 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC104619.4-201ENST00000510773 249 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.31□□□□□ -1.88
NPAS1Q99742 TBCAP3-201ENST00000512475 312 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC118273.2-201ENST00000532092 465 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AP000763.2-201ENST00000540641 163 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.31□□□□□ -1.88
NPAS1Q99742 AC078814.3-201ENST00000553036 491 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.31□□□□□ -1.88
NPAS1Q99742 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.31□□□□□ -1.88
NPAS1Q99742 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.31□□□□□ -1.88
NPAS1Q99742 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
NPAS1Q99742 AL008636.1-201ENST00000625038 1018 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 U6.99-201ENST00000637524 83 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
NPAS1Q99742 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NPAS1Q99742 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
NPAS1Q99742 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NPAS1Q99742 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
NPAS1Q99742 AC005183.1-201ENST00000603687 1979 ntBASIC3.31□□□□□ -1.88
NPAS1Q99742 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.3□□□□□ -1.88
NPAS1Q99742 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.3□□□□□ -1.88
NPAS1Q99742 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NPAS1Q99742 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NPAS1Q99742 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
NPAS1Q99742 FGF7P8-201ENST00000402994 292 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 RNU6ATAC-201ENST00000408749 126 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 SNORA11-201ENST00000408789 128 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC017079.2-201ENST00000416102 485 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC007560.1-201ENST00000426912 237 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 RPS24P13-201ENST00000442520 397 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 PRPS1P1-201ENST00000445305 876 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC008264.1-201ENST00000447612 367 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AL590664.1-201ENST00000448065 339 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AL133547.1-201ENST00000448546 220 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.3□□□□□ -1.88
NPAS1Q99742 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.3□□□□□ -1.88
NPAS1Q99742 AL590639.1-201ENST00000456484 337 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 U3.44-201ENST00000458938 192 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC007547.1-201ENST00000462177 490 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AL135752.1-201ENST00000479477 471 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC139453.3-201ENST00000493276 369 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 SNORA67.7-201ENST00000516664 135 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 RN7SKP209-201ENST00000516888 304 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.3□□□□□ -1.88
NPAS1Q99742 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.3□□□□□ -1.88
NPAS1Q99742 AC037471.2-201ENST00000564941 598 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 MIR3609-201ENST00000582661 80 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 MIR3922-201ENST00000585192 84 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC092747.3-201ENST00000603769 301 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC006504.8-201ENST00000621046 635 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 AC006111.3-201ENST00000622137 383 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.3□□□□□ -1.88
NPAS1Q99742 AP000553.6-201ENST00000641242 118 ntBASIC3.3□□□□□ -1.88
NPAS1Q99742 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NPAS1Q99742 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.3□□□□□ -1.88
NPAS1Q99742 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
NPAS1Q99742 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
NPAS1Q99742 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
NPAS1Q99742 SNORD9-201ENST00000362566 104 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 Y_RNA.88-201ENST00000363029 99 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 SNORA72.1-201ENST00000363485 129 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 Y_RNA.378-201ENST00000365652 113 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 RNY3P14-201ENST00000384309 102 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 MIR591-201ENST00000385290 95 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 BX323014.1-201ENST00000412876 237 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 AC138393.2-201ENST00000414742 246 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.29□□□□□ -1.88
NPAS1Q99742 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.29□□□□□ -1.88
NPAS1Q99742 MRPS31P2-201ENST00000451581 518 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.29□□□□□ -1.88
NPAS1Q99742 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.29□□□□□ -1.88
NPAS1Q99742 MTCO3P9-201ENST00000506989 781 ntBASIC3.29□□□□□ -1.88
NPAS1Q99742 RN7SKP83-201ENST00000516512 178 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms