Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RPS3AP24-201ENST00000407896 734 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 RNU2-41P-201ENST00000410991 178 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 LINC00933-203ENST00000559812 219 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 MIR3616-201ENST00000584070 92 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC138473.1-201ENST00000605717 526 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AP002826.1-201ENST00000608835 315 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC243829.6-201ENST00000612652 106 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC025594.3-201ENST00000613068 790 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC068880.5-201ENST00000624331 290 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 RPS20P10-201ENST00000451209 253 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 SNORD116-30-201ENST00000516468 85 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 CASP1P1-201ENST00000526345 212 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC007785.2-201ENST00000598627 1916 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 Y_RNA.136-201ENST00000363444 102 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 Y_RNA.493-201ENST00000384422 102 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AL355497.1-201ENST00000406262 551 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC114982.2-201ENST00000461396 358 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AL135752.1-201ENST00000479477 471 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AL161629.2-201ENST00000615347 275 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
CHD9Q3L8U1 RNU6-288P-201ENST00000363690 104 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 RPS15AP38-201ENST00000413110 372 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC024082.2-201ENST00000434771 238 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 RPS15AP27-201ENST00000449183 343 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 MTND4LP3-201ENST00000468320 276 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 CIR1P1-201ENST00000524055 1133 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC023158.1-201ENST00000561632 1025 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC021749.1-201ENST00000604322 607 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC107214.2-201ENST00000608204 634 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 MIR409-201ENST00000362237 79 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AL356432.1-201ENST00000405809 419 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 RNU2-70P-201ENST00000410718 179 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 BEND7P1-201ENST00000422058 457 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC0.7□□□□□ -2.3
CHD9Q3L8U1 RPL26P9-201ENST00000457466 433 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC105252.1-201ENST00000503089 286 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 RNU6-229P-201ENST00000516614 102 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC008562.1-201ENST00000521763 330 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 POLR2KP1-201ENST00000553226 168 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC0.7□□□□□ -2.3
CHD9Q3L8U1 AC097372.4-201ENST00000625025 466 ntBASIC0.7□□□□□ -2.3
CHD9Q3L8U1 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 RNU6-989P-201ENST00000362756 107 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 U8.3-201ENST00000363321 132 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 RNU6-418P-201ENST00000384035 107 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 C1DP3-201ENST00000455013 423 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 NDUFB4P2-201ENST00000509515 391 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AL049870.4-201ENST00000555741 486 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 MIR3921-201ENST00000577308 85 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC011260.1-201ENST00000578420 472 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC087588.2-201ENST00000617667 426 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AL162373.1-201ENST00000620433 407 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC002550.2-201ENST00000621246 394 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC010329.5-201ENST00000623497 2174 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 RNU6-1072P-201ENST00000384703 107 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 RNU6-443P-201ENST00000384780 107 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 MIR5571-201ENST00000577998 113 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 HMGN1P30-201ENST00000589286 268 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.69□□□□□ -2.3
CHD9Q3L8U1 MTND5P30-201ENST00000452896 1731 ntBASIC0.69□□□□□ -2.3
CHD9Q3L8U1 RNU5D-1-201ENST00000363299 116 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 RNY4P3-201ENST00000365254 95 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 SFR1P1-201ENST00000403720 688 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 PTGES3P2-201ENST00000407942 482 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 MTND2P9-201ENST00000422293 931 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC004854.1-201ENST00000440356 349 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 AC068135.1-201ENST00000446164 246 ntBASIC0.68□□□□□ -2.3
CHD9Q3L8U1 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.68□□□□□ -2.3
CHD9Q3L8U1 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms