Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 HSPA8P1-201ENST00000425843 1833 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SOX4Q06945 FAM91A3P-201ENST00000456826 2544 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SOX4Q06945 Y_RNA.27-201ENST00000362540 103 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 Y_RNA.200-201ENST00000364018 102 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 RNA5SP175-201ENST00000364275 119 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 Y_RNA.269-201ENST00000364685 89 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 Y_RNA.464-201ENST00000384282 110 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SOX4Q06945 SNORD115-46-201ENST00000390982 71 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 PCNPP3-201ENST00000393579 471 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 RNA5SP317-201ENST00000410176 116 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 RNA5SP494-201ENST00000410653 129 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 RNA5SP311-201ENST00000411290 116 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 AL139156.1-201ENST00000412785 841 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.63□□□□□ -1.67
SOX4Q06945 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.63□□□□□ -1.67
SOX4Q06945 AL096701.2-201ENST00000416920 238 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 USP9YP7-201ENST00000436723 430 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 USP9YP32-201ENST00000452432 430 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC4.63□□□□□ -1.67
SOX4Q06945 HMGN1P11-201ENST00000508668 303 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 APOOP4-201ENST00000513530 597 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 RNA5SP315-201ENST00000516340 116 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 MIR892C-201ENST00000516410 77 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 Y_RNA.713-201ENST00000517013 96 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 RNA5SP312-201ENST00000517068 116 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.63□□□□□ -1.67
SOX4Q06945 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.63□□□□□ -1.67
SOX4Q06945 TVP23BP1-201ENST00000557500 617 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 BNIP3P5-201ENST00000562290 498 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 MIR3133-201ENST00000583157 78 ntBASIC4.63□□□□□ -1.67
SOX4Q06945 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SOX4Q06945 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.63□□□□□ -1.67
SOX4Q06945 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.63□□□□□ -1.67
SOX4Q06945 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SOX4Q06945 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SOX4Q06945 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SOX4Q06945 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX4Q06945 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
SOX4Q06945 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SOX4Q06945 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX4Q06945 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX4Q06945 AP000542.2-201ENST00000623199 6179 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX4Q06945 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SOX4Q06945 RNU1-44P-201ENST00000384453 163 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 RNU6-882P-201ENST00000391025 103 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 MIR1911-201ENST00000410783 80 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 AL513124.1-201ENST00000450410 614 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX4Q06945 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.62□□□□□ -1.67
SOX4Q06945 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.62□□□□□ -1.67
SOX4Q06945 TRAV37-201ENST00000553906 342 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 AC007224.1-201ENST00000564410 144 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SOX4Q06945 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.62□□□□□ -1.67
SOX4Q06945 MIR8059-201ENST00000620427 81 ntBASIC4.62□□□□□ -1.67
SOX4Q06945 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SOX4Q06945 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX4Q06945 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX4Q06945 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SOX4Q06945 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SOX4Q06945 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SOX4Q06945 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SOX4Q06945 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX4Q06945 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SOX4Q06945 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX4Q06945 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX4Q06945 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX4Q06945 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
SOX4Q06945 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX4Q06945 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX4Q06945 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SOX4Q06945 UBE2L2-201ENST00000254302 429 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 AC007685.1-201ENST00000329806 452 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 RNU6-545P-201ENST00000362681 104 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 RNU1-13P-201ENST00000384499 162 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 MIR1193-201ENST00000408109 78 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.61□□□□□ -1.67
SOX4Q06945 HSPD1P21-201ENST00000436541 245 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 snoU13.3-201ENST00000459441 104 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX4Q06945 AC087190.1-201ENST00000484462 480 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 AC107032.1-201ENST00000485945 480 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 RPL30P10-201ENST00000488148 337 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 AC010469.2-201ENST00000496412 480 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX4Q06945 RNU6-1338P-201ENST00000516328 91 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 AC008694.2-201ENST00000517591 306 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 MIR1273C-201ENST00000578669 77 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX4Q06945 AC009314.1-201ENST00000603871 304 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 FAM27D1-201ENST00000612308 341 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 MIR376A1-201ENST00000616574 68 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 AC131238.1-201ENST00000617135 328 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 ZYXP1-201ENST00000617638 118 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 RNA5SP196-201ENST00000625967 102 ntBASIC4.61□□□□□ -1.67
SOX4Q06945 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms