Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPS20P20-201ENST00000460498 340 ntBASIC1.15□□□□□ -2.22
CUX1P39880 AC104108.1-201ENST00000509930 412 ntBASIC1.15□□□□□ -2.22
CUX1P39880 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.15□□□□□ -2.22
CUX1P39880 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC1.15□□□□□ -2.22
CUX1P39880 CYCSP2-201ENST00000558168 301 ntBASIC1.15□□□□□ -2.22
CUX1P39880 AC090666.1-201ENST00000578241 445 ntBASIC1.15□□□□□ -2.22
CUX1P39880 XIAPP1-201ENST00000603162 600 ntBASIC1.15□□□□□ -2.22
CUX1P39880 AL118508.4-201ENST00000624142 1176 ntBASIC1.15□□□□□ -2.22
CUX1P39880 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.15□□□□□ -2.22
CUX1P39880 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
CUX1P39880 ZNF702P-202ENST00000434269 1966 ntBASIC1.15□□□□□ -2.23
CUX1P39880 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.15□□□□□ -2.23
CUX1P39880 NACAP2-201ENST00000318548 624 ntBASIC1.15□□□□□ -2.23
CUX1P39880 RNU6-263P-201ENST00000363811 107 ntBASIC1.15□□□□□ -2.23
CUX1P39880 RPL23AP3-201ENST00000453844 468 ntBASIC1.15□□□□□ -2.23
CUX1P39880 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.15□□□□□ -2.23
CUX1P39880 AP005902.1-201ENST00000521358 186 ntBASIC1.15□□□□□ -2.23
CUX1P39880 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC1.15□□□□□ -2.23
CUX1P39880 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.15□□□□□ -2.23
CUX1P39880 AP001485.1-201ENST00000604799 199 ntBASIC1.15□□□□□ -2.23
CUX1P39880 PRR13P7-201ENST00000605538 430 ntBASIC1.15□□□□□ -2.23
CUX1P39880 AC006270.3-201ENST00000605967 1036 ntBASIC1.15□□□□□ -2.23
CUX1P39880 AC009229.3-201ENST00000608056 282 ntBASIC1.15□□□□□ -2.23
CUX1P39880 AC079395.3-201ENST00000615161 484 ntBASIC1.15□□□□□ -2.23
CUX1P39880 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CUX1P39880 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CUX1P39880 Y_RNA.274-201ENST00000364714 101 ntBASIC1.14□□□□□ -2.23
CUX1P39880 SNORA23-201ENST00000365128 182 ntBASIC1.14□□□□□ -2.23
CUX1P39880 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CUX1P39880 OR6C72P-201ENST00000451403 892 ntBASIC1.14□□□□□ -2.23
CUX1P39880 C1DP3-201ENST00000455013 423 ntBASIC1.14□□□□□ -2.23
CUX1P39880 SUMO2P2-201ENST00000456482 255 ntBASIC1.14□□□□□ -2.23
CUX1P39880 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CUX1P39880 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.14□□□□□ -2.23
CUX1P39880 SNRPGP16-201ENST00000533275 226 ntBASIC1.14□□□□□ -2.23
CUX1P39880 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.14□□□□□ -2.23
CUX1P39880 MIR4299-201ENST00000577899 72 ntBASIC1.14□□□□□ -2.23
CUX1P39880 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.14□□□□□ -2.23
CUX1P39880 AC013244.2-201ENST00000603396 103 ntBASIC1.14□□□□□ -2.23
CUX1P39880 RMST_5.1-201ENST00000618704 126 ntBASIC1.14□□□□□ -2.23
CUX1P39880 RNU6-942P-201ENST00000363002 107 ntBASIC1.13□□□□□ -2.23
CUX1P39880 RNU6-1293P-201ENST00000384077 107 ntBASIC1.13□□□□□ -2.23
CUX1P39880 AL356131.1-201ENST00000405826 414 ntBASIC1.13□□□□□ -2.23
CUX1P39880 HMGB3P31-201ENST00000413333 595 ntBASIC1.13□□□□□ -2.23
CUX1P39880 UBE2FP1-201ENST00000416536 447 ntBASIC1.13□□□□□ -2.23
CUX1P39880 SFR1P2-201ENST00000421841 730 ntBASIC1.13□□□□□ -2.23
CUX1P39880 AL365496.1-201ENST00000426885 215 ntBASIC1.13□□□□□ -2.23
CUX1P39880 AL353689.1-201ENST00000438895 199 ntBASIC1.13□□□□□ -2.23
CUX1P39880 MTATP6P7-201ENST00000453315 681 ntBASIC1.13□□□□□ -2.23
CUX1P39880 AC021146.2-201ENST00000504736 556 ntBASIC1.13□□□□□ -2.23
CUX1P39880 SNORA31.25-201ENST00000517242 134 ntBASIC1.13□□□□□ -2.23
CUX1P39880 OR5AL2P-201ENST00000532185 920 ntBASIC1.13□□□□□ -2.23
CUX1P39880 FAM60BP-201ENST00000578364 658 ntBASIC1.13□□□□□ -2.23
CUX1P39880 RNU6-156P-201ENST00000621869 107 ntBASIC1.13□□□□□ -2.23
CUX1P39880 MIR7515-201ENST00000637837 67 ntBASIC1.13□□□□□ -2.23
CUX1P39880 AL049737.1-201ENST00000413920 1403 ntBASIC1.12□□□□□ -2.23
CUX1P39880 SEPT2P1-201ENST00000419651 180 ntBASIC1.12□□□□□ -2.23
CUX1P39880 RPL7L1P10-201ENST00000427790 463 ntBASIC1.12□□□□□ -2.23
CUX1P39880 AC027575.1-201ENST00000481064 460 ntBASIC1.12□□□□□ -2.23
CUX1P39880 MRPS36P2-201ENST00000512569 299 ntBASIC1.12□□□□□ -2.23
CUX1P39880 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.12□□□□□ -2.23
CUX1P39880 AP005639.2-201ENST00000527592 928 ntBASIC1.12□□□□□ -2.23
CUX1P39880 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.12□□□□□ -2.23
CUX1P39880 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CUX1P39880 RNU6-244P-201ENST00000391028 104 ntBASIC1.11□□□□□ -2.23
CUX1P39880 BX248409.1-201ENST00000455497 255 ntBASIC1.11□□□□□ -2.23
CUX1P39880 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.11□□□□□ -2.23
CUX1P39880 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CUX1P39880 AC114786.4-201ENST00000508771 728 ntBASIC1.11□□□□□ -2.23
CUX1P39880 AC114797.1-201ENST00000514003 728 ntBASIC1.11□□□□□ -2.23
CUX1P39880 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.11□□□□□ -2.23
CUX1P39880 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.11□□□□□ -2.23
CUX1P39880 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.11□□□□□ -2.23
CUX1P39880 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC1.11□□□□□ -2.23
CUX1P39880 AC007038.2-201ENST00000608095 740 ntBASIC1.11□□□□□ -2.23
CUX1P39880 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.11□□□□□ -2.23
CUX1P39880 MIR767-201ENST00000390228 109 ntBASIC1.1□□□□□ -2.23
CUX1P39880 RPS3AP24-201ENST00000407896 734 ntBASIC1.1□□□□□ -2.23
CUX1P39880 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.1□□□□□ -2.23
CUX1P39880 AC000111.3-201ENST00000433478 193 ntBASIC1.1□□□□□ -2.23
CUX1P39880 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC1.1□□□□□ -2.23
CUX1P39880 RNU6-496P-201ENST00000516145 99 ntBASIC1.1□□□□□ -2.23
CUX1P39880 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.1□□□□□ -2.23
CUX1P39880 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.1□□□□□ -2.23
CUX1P39880 MIR548Y-201ENST00000582739 110 ntBASIC1.1□□□□□ -2.23
CUX1P39880 AC103710.4-201ENST00000609301 899 ntBASIC1.1□□□□□ -2.23
CUX1P39880 MIR493-201ENST00000385254 89 ntBASIC1.1□□□□□ -2.23
CUX1P39880 HSPE1P21-201ENST00000438283 308 ntBASIC1.1□□□□□ -2.23
CUX1P39880 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.1□□□□□ -2.23
CUX1P39880 AL359385.1-201ENST00000456509 365 ntBASIC1.1□□□□□ -2.23
CUX1P39880 PNPLA4P1-201ENST00000458328 305 ntBASIC1.1□□□□□ -2.23
CUX1P39880 snoU13.28-201ENST00000459235 104 ntBASIC1.1□□□□□ -2.23
CUX1P39880 AC103851.1-201ENST00000506833 274 ntBASIC1.1□□□□□ -2.23
CUX1P39880 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC1.1□□□□□ -2.23
CUX1P39880 AC105036.1-201ENST00000566222 271 ntBASIC1.1□□□□□ -2.23
CUX1P39880 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
CUX1P39880 AL360181.4-201ENST00000621752 134 ntBASIC1.1□□□□□ -2.23
CUX1P39880 AC123912.3-201ENST00000600907 1367 ntBASIC1.09□□□□□ -2.23
CUX1P39880 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CUX1P39880 Y_RNA.280-201ENST00000364765 112 ntBASIC1.09□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms