Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
SCN11AQ9UI33 Y_RNA.85-201ENST00000363014 111 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 RN7SKP158-201ENST00000410453 326 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.03□□□□□ -2.24
SCN11AQ9UI33 HAR1A.1-201ENST00000459583 118 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 OR2A41P-201ENST00000473586 105 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 RPS27AP10-201ENST00000496103 208 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 RNA5SP337-201ENST00000517007 109 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 AL009028.1-201ENST00000604895 802 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 AC103710.4-201ENST00000609301 899 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.03□□□□□ -2.24
SCN11AQ9UI33 LINC02211-204ENST00000642024 1070 ntBASIC1.03□□□□□ -2.24
SCN11AQ9UI33 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC007785.2-201ENST00000598627 1916 ntBASIC1.02□□□□□ -2.25
SCN11AQ9UI33 CBX3P1-201ENST00000325243 554 ntBASIC1.02□□□□□ -2.25
SCN11AQ9UI33 MIR320B1-201ENST00000390209 79 ntBASIC1.02□□□□□ -2.25
SCN11AQ9UI33 MIR1197-201ENST00000408818 88 ntBASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC005908.1-201ENST00000468701 347 ntBASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC112198.4-201ENST00000515450 351 ntBASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 7SK.7-201ENST00000603504 247 ntBASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.02□□□□□ -2.25
SCN11AQ9UI33 AC087359.1-201ENST00000508335 1740 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 RNU6-198P-201ENST00000384258 104 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 RPS15AP40-201ENST00000419621 391 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 RNA5SP121-201ENST00000516537 101 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 RNA5SP193-201ENST00000410353 107 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 RN7SKP200-201ENST00000410564 320 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 NUP35P2-201ENST00000416748 943 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 RPL27AP8-201ENST00000424277 446 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 FTH1P12-201ENST00000432137 551 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 HSPE1P21-201ENST00000438283 308 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 KLF3P2-201ENST00000465138 268 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 AC112518.2-201ENST00000508565 425 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 AC008834.1-201ENST00000511612 175 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 SNRPGP16-201ENST00000533275 226 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 AC005498.1-201ENST00000592125 465 ntBASIC1.01□□□□□ -2.25
SCN11AQ9UI33 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.01□□□□□ -2.25
SCN11AQ9UI33 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1□□□□□ -2.25
SCN11AQ9UI33 OFD1P12Y-201ENST00000427963 1207 ntBASIC1□□□□□ -2.25
SCN11AQ9UI33 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1□□□□□ -2.25
SCN11AQ9UI33 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1□□□□□ -2.25
SCN11AQ9UI33 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC1□□□□□ -2.25
SCN11AQ9UI33 BX248409.1-201ENST00000455497 255 ntBASIC1□□□□□ -2.25
SCN11AQ9UI33 snoU13.28-201ENST00000459235 104 ntBASIC1□□□□□ -2.25
SCN11AQ9UI33 RPS20P20-201ENST00000460498 340 ntBASIC1□□□□□ -2.25
SCN11AQ9UI33 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1□□□□□ -2.25
SCN11AQ9UI33 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1□□□□□ -2.25
SCN11AQ9UI33 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1□□□□□ -2.25
SCN11AQ9UI33 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1□□□□□ -2.25
SCN11AQ9UI33 AL713998.2-201ENST00000604538 1198 ntBASIC1□□□□□ -2.25
SCN11AQ9UI33 AC055764.2-201ENST00000610089 670 ntBASIC1□□□□□ -2.25
SCN11AQ9UI33 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC1□□□□□ -2.25
SCN11AQ9UI33 AL589743.1-201ENST00000551932 2712 ntBASIC0.99□□□□□ -2.25
SCN11AQ9UI33 RNU6-220P-201ENST00000390919 107 ntBASIC0.99□□□□□ -2.25
SCN11AQ9UI33 AL139397.2-201ENST00000404529 772 ntBASIC0.99□□□□□ -2.25
SCN11AQ9UI33 MRPL35P3-201ENST00000421557 364 ntBASIC0.99□□□□□ -2.25
SCN11AQ9UI33 AC021146.2-201ENST00000504736 556 ntBASIC0.99□□□□□ -2.25
SCN11AQ9UI33 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.99□□□□□ -2.25
SCN11AQ9UI33 MIR3198-2-201ENST00000577868 80 ntBASIC0.99□□□□□ -2.25
SCN11AQ9UI33 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.99□□□□□ -2.25
SCN11AQ9UI33 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.99□□□□□ -2.25
SCN11AQ9UI33 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
SCN11AQ9UI33 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
SCN11AQ9UI33 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AC087588.1-201ENST00000462203 316 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 LARP7P4-201ENST00000481075 878 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AC139453.3-201ENST00000493276 369 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN11AQ9UI33 MIR4711-201ENST00000578274 70 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 VN1R81P-201ENST00000602085 372 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AP001485.1-201ENST00000604799 199 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AP002791.1-201ENST00000623291 381 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AL356473.1-201ENST00000406203 1408 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 BTF3L4P2-201ENST00000392798 346 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 TATDN1P1-201ENST00000414123 891 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AC098614.2-201ENST00000426040 255 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AC006548.1-201ENST00000427470 102 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 FAM206BP-201ENST00000510179 541 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AC093752.1-206ENST00000511823 336 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.98□□□□□ -2.25
SCN11AQ9UI33 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN11AQ9UI33 CR381572.1-201ENST00000625098 102 ntBASIC0.98□□□□□ -2.25
SCN11AQ9UI33 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
SCN11AQ9UI33 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
SCN11AQ9UI33 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms