Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL591212.2-201ENST00000433923 257 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 AL008629.1-201ENST00000438615 184 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 AL591719.1-201ENST00000444669 744 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 SSXP1-201ENST00000453640 473 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 SNORA31.6-201ENST00000516241 130 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 RNU6-1315P-201ENST00000517187 99 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 LINC00933-203ENST00000559812 219 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 VN1R90P-201ENST00000595717 726 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 AC008751.2-201ENST00000597885 980 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 AC008121.1-201ENST00000603244 268 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 MIR7844-201ENST00000616161 122 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 ATP5A1P2-202ENST00000616464 443 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 AL512643.1-201ENST00000635735 524 ntBASIC3.72□□□□□ -1.81
CHMP4AQ9BY43 RNU6-1214P-201ENST00000363650 109 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 RNU6-395P-201ENST00000365662 106 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 RPL21P3-201ENST00000395517 478 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 RNU6-1328P-201ENST00000410938 106 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 XKRYP1-201ENST00000423438 492 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC007560.1-201ENST00000426912 237 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 XKRYP2-201ENST00000432915 492 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC118469.1-201ENST00000442943 488 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC011753.1-201ENST00000451001 220 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 HSPE1P23-201ENST00000509838 286 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC123904.2-201ENST00000548059 300 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 MIR4760-201ENST00000585040 80 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 AC090115.4-201ENST00000609970 188 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 HMGB1P24-202ENST00000615653 685 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 U4atac.1-201ENST00000618345 95 ntBASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CHMP4AQ9BY43 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 RNU6-660P-201ENST00000364566 109 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 SNORA67.1-201ENST00000364749 141 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AL139109.1-201ENST00000455491 297 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 BTF3P15-201ENST00000455606 336 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 EIF4BP1-201ENST00000554881 351 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 ROCK1P1-201ENST00000573767 549 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AC015871.2-201ENST00000603605 948 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 MIR7106-201ENST00000612419 65 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CHMP4AQ9BY43 AC138393.1-203ENST00000327086 343 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 RNU6-809P-201ENST00000384461 107 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 Y_RNA.534-201ENST00000384599 112 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AL353621.1-201ENST00000418219 243 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC236972.1-201ENST00000433225 199 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AL078601.1-201ENST00000444542 271 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 SNRPFP4-201ENST00000456366 242 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC090096.1-201ENST00000489168 390 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 MRPS33P3-201ENST00000513456 322 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 MRPS36P3-201ENST00000519284 130 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC073544.2-201ENST00000601155 540 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AP001981.2-201ENST00000603241 418 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC007938.3-201ENST00000604965 623 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AC024581.2-201ENST00000619986 252 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 AL137790.1-201ENST00000634283 177 ntBASIC3.69□□□□□ -1.82
CHMP4AQ9BY43 Z99571.1-201ENST00000636677 394 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms