Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 PCNAP1-201ENST00000505363 709 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 SNORA48.9-201ENST00000516419 162 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 MIR5589-201ENST00000579442 60 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 MIR3616-201ENST00000584070 92 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC078899.2-201ENST00000595282 212 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AL627230.6-201ENST00000611129 280 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AL355810.1-201ENST00000614629 552 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AC068880.5-201ENST00000624331 290 ntBASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC0.66□□□□□ -2.3
CSPG4Q6UVK1 RNU6-317P-201ENST00000384031 107 ntBASIC0.65□□□□□ -2.3
CSPG4Q6UVK1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.65□□□□□ -2.3
CSPG4Q6UVK1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC0.65□□□□□ -2.3
CSPG4Q6UVK1 NAP1L1P3-201ENST00000462291 880 ntBASIC0.65□□□□□ -2.3
CSPG4Q6UVK1 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.65□□□□□ -2.3
CSPG4Q6UVK1 MIR6864-201ENST00000617935 70 ntBASIC0.65□□□□□ -2.3
CSPG4Q6UVK1 AL133370.2-201ENST00000619934 439 ntBASIC0.65□□□□□ -2.3
CSPG4Q6UVK1 AC008555.8-201ENST00000623602 2168 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 SNORD114-2-201ENST00000363953 78 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 SNORD26-201ENST00000384147 75 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 AC004854.1-201ENST00000440356 349 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 AL645638.1-201ENST00000440519 361 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 RPL26P9-201ENST00000457466 433 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 CABYRP1-201ENST00000465493 1045 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 NUTF2P8-201ENST00000604593 363 ntBASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.65□□□□□ -2.31
CSPG4Q6UVK1 RNU6-942P-201ENST00000363002 107 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 RNU1-105P-201ENST00000363470 161 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 RNU6-173P-201ENST00000364215 104 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 RNU6-16P-201ENST00000384385 107 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC055731.1-201ENST00000474387 401 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC117454.1-201ENST00000491120 168 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 RNU5F-8P-201ENST00000515941 111 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC110491.1-201ENST00000562191 2010 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 OR4G2P-201ENST00000328113 903 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 RNU6-920P-201ENST00000410926 92 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC098614.2-201ENST00000426040 255 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 HMGB1P9-201ENST00000429856 646 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 ELOCP11-201ENST00000436690 332 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 ELOCP16-201ENST00000444494 332 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC087879.1-201ENST00000474343 374 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 MRPS36P2-201ENST00000512569 299 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC108120.2-201ENST00000512973 294 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AP005639.2-201ENST00000527592 928 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 MED28P6-201ENST00000558776 231 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 MIR4653-201ENST00000585107 83 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 AC139769.3-201ENST00000618383 175 ntBASIC0.64□□□□□ -2.31
CSPG4Q6UVK1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC019070.1-201ENST00000415008 1024 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 NUP35P2-201ENST00000416748 943 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC015922.2-201ENST00000435593 184 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 RPS20P10-201ENST00000451209 253 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC117503.1-201ENST00000472241 394 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 SNORA31.8-201ENST00000516327 108 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC133485.1-201ENST00000567176 124 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC138907.6-201ENST00000568401 126 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 FAM60BP-201ENST00000578364 658 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC243829.3-201ENST00000622177 108 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 Z69720.2-201ENST00000624755 279 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 Y_RNA.62-201ENST00000362840 99 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 SNORA23-201ENST00000365128 182 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AL161449.1-201ENST00000414531 1199 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 TRAPPC2P4-201ENST00000421750 331 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 AC010099.1-201ENST00000455434 375 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 SCARNA1-201ENST00000517138 166 ntBASIC0.63□□□□□ -2.31
CSPG4Q6UVK1 OR5AL2P-201ENST00000532185 920 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms