Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 NEFMP1-201ENST00000443423 1006 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 ELOCP23-201ENST00000452014 332 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RPL23AP31-201ENST00000456160 467 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 PMCHL2-203ENST00000457791 237 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 UBE2CP3-201ENST00000502715 450 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC104619.4-201ENST00000510773 249 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RAC1P2-201ENST00000511164 579 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RNU4-29P-201ENST00000515943 174 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RNU6-875P-201ENST00000516488 106 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RN7SKP60-201ENST00000516985 239 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC022695.1-201ENST00000522089 237 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 PSMA2P1-201ENST00000526365 646 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC078814.3-201ENST00000553036 491 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AL355836.1-201ENST00000555951 870 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC009994.1-201ENST00000606889 253 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AC012409.4-201ENST00000612923 249 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 MIR7975-201ENST00000619350 68 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 MFSD8-236ENST00000641509 4050 ntBASIC3.58□□□□□ -1.84
VPS4AQ9UN37 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4AQ9UN37 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 Y_RNA.70-201ENST00000362886 110 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 Y_RNA.231-201ENST00000364358 102 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 RNU6-550P-201ENST00000391057 101 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AL513331.1-201ENST00000411908 397 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 SYF2P2-201ENST00000417620 583 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 NDUFB4P7-201ENST00000423198 363 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AL591419.1-201ENST00000427423 339 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 CALM2P2-201ENST00000428512 440 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 CBWD4P-201ENST00000445695 655 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 RPS4XP13-201ENST00000483219 789 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC106707.2-201ENST00000484182 374 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC104806.1-201ENST00000508720 308 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 RNU6-507P-201ENST00000516045 100 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 SCARNA15.2-201ENST00000516409 127 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 RNU6-840P-201ENST00000517275 65 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 RPL23AP84-201ENST00000571193 464 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC087499.8-201ENST00000578406 226 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AL021368.2-201ENST00000606125 5352 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC034102.8-201ENST00000615146 484 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 AP001148.1-201ENST00000624124 2359 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 U6.114-201ENST00000636407 96 ntBASIC3.57□□□□□ -1.84
VPS4AQ9UN37 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS4AQ9UN37 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 TPTE2P4-201ENST00000258589 1605 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 NACAP2-201ENST00000318548 624 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNU5A-1-201ENST00000362698 116 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNU6-522P-201ENST00000364497 107 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNU6-332P-201ENST00000391193 108 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RAP1BP3-201ENST00000407180 549 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNU4-46P-201ENST00000410818 138 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNU6-1148P-201ENST00000410992 104 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RNU2-71P-201ENST00000411395 189 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 RPS15AP6-201ENST00000420703 385 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AP000907.1-201ENST00000428428 510 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 ERLEC1P1-201ENST00000433806 578 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 SNORA71B-202ENST00000439232 272 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 MTND4LP16-201ENST00000440828 295 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 SNRPEP8-201ENST00000442866 260 ntBASIC3.56□□□□□ -1.84
VPS4AQ9UN37 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS4AQ9UN37 AC087588.1-201ENST00000462203 316 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms