Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL022154.1-201ENST00000604698 785 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AF117829.1-206ENST00000621883 3802 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USP41Q3LFD5 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USP41Q3LFD5 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP41Q3LFD5 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC073343.1-201ENST00000328239 651 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP41Q3LFD5 MIR22-201ENST00000362190 85 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP41Q3LFD5 SNORA54-201ENST00000384281 123 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 Y_RNA.500-201ENST00000384466 111 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 RPL21P3-201ENST00000395517 478 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 RNU4-55P-201ENST00000410731 137 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AL513331.1-201ENST00000411908 397 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 BTF3L4P3-201ENST00000418879 476 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC022018.1-201ENST00000430685 241 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 DNAJC19P4-201ENST00000440115 345 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC025750.2-201ENST00000442609 450 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 SSXP4-201ENST00000451349 245 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC146507.2-201ENST00000460608 476 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 TTC39CP1-201ENST00000512513 755 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AP006587.4-201ENST00000526053 529 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC016957.1-201ENST00000534895 309 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 DEFB131E-202ENST00000602581 683 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC013553.2-201ENST00000604244 589 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AL121992.2-201ENST00000606262 256 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC091903.1-201ENST00000624322 454 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.3□□□□□ -1.88
USP41Q3LFD5 AC090740.1-201ENST00000623193 2262 ntBASIC3.3□□□□□ -1.88
USP41Q3LFD5 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP41Q3LFD5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP41Q3LFD5 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP41Q3LFD5 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
USP41Q3LFD5 Y_RNA.22-201ENST00000362492 102 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 SNORA48.8-201ENST00000391324 134 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 RNU2-39P-201ENST00000410604 198 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AF274854.1-201ENST00000413236 615 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 ZNF885P-201ENST00000420174 1098 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 MED13P1-201ENST00000428342 171 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC092573.2-201ENST00000434546 243 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC002486.1-201ENST00000435098 391 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 NEFMP1-201ENST00000443423 1006 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC079781.2-201ENST00000446424 169 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 RPL9P33-201ENST00000484311 566 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 HMGB1P29-201ENST00000505659 499 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 RN7SKP258-201ENST00000517151 304 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 SCARNA20.6-201ENST00000517251 106 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC005951.1-201ENST00000576706 485 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 AC007619.2-201ENST00000605743 379 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 MIR6863-201ENST00000636112 90 ntBASIC3.29□□□□□ -1.88
USP41Q3LFD5 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP41Q3LFD5 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
USP41Q3LFD5 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
USP41Q3LFD5 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 Y_RNA.1-201ENST00000352915 104 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNU6-1097P-201ENST00000363586 107 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNU6-960P-201ENST00000364056 120 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNU6-108P-201ENST00000365558 107 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 SMIM11P1-201ENST00000369586 178 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 Y_RNA.516-201ENST00000384541 124 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 SNORD67-201ENST00000390833 111 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNU6-1197P-201ENST00000391183 107 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
USP41Q3LFD5 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 MIR1289-1-201ENST00000408836 144 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC007919.1-201ENST00000429380 217 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 OR2B8P-201ENST00000432841 938 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 RPS20P5-201ENST00000434808 360 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 NDUFB4P6-201ENST00000436819 366 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 HMGB3P12-201ENST00000438745 556 ntBASIC3.28□□□□□ -1.88
USP41Q3LFD5 AC009237.8-201ENST00000445492 379 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms