Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC073073.2-201ENST00000609827 2578 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL28A1Q2UY09 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RNU6-1120P-201ENST00000362988 108 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RNA5SP42-201ENST00000364278 115 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RNU6-641P-201ENST00000384006 107 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RNU6-606P-201ENST00000384721 111 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AL136116.1-201ENST00000403591 381 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AL357075.1-201ENST00000404107 726 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RPL35AP12-201ENST00000425362 338 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RPL23AP69-201ENST00000431134 458 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 HMGB1P27-201ENST00000431429 603 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 MTATP6P16-201ENST00000434543 526 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 SETP5-201ENST00000437270 562 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RPL9P33-201ENST00000484311 566 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC110794.1-201ENST00000505816 425 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC116562.3-201ENST00000506136 177 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 RNU6-579P-201ENST00000516879 102 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AP001646.1-201ENST00000527936 915 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC068587.5-201ENST00000528506 175 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 OR5BN1P-201ENST00000532955 829 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 TRAV37-201ENST00000553906 342 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC024619.4-201ENST00000580924 316 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AL121992.2-201ENST00000606262 256 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC107294.3-201ENST00000609211 526 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AC007684.1-201ENST00000609671 477 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AL158209.2-201ENST00000619266 216 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 AP003355.3-201ENST00000623465 114 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL28A1Q2UY09 Z83843.1-201ENST00000604070 3685 ntBASIC3.26□□□□□ -1.89
COL28A1Q2UY09 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 MTND5P27-201ENST00000428871 1720 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 RNU6-1167P-201ENST00000363227 94 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AP002088.1-201ENST00000382740 395 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 RNU6-1215P-201ENST00000384441 102 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 MIR454-201ENST00000390180 115 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 RPS4XP8-201ENST00000402039 771 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 RNU6-387P-201ENST00000411331 105 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 ZNF885P-201ENST00000420174 1098 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AL109913.1-201ENST00000421173 514 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AC093106.2-201ENST00000428212 385 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 BX679664.1-201ENST00000434429 253 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 PIGFP3-201ENST00000441918 722 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AL590664.1-201ENST00000448065 339 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AC125238.1-201ENST00000448842 249 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 RNU6-420P-201ENST00000458780 107 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AC084357.1-201ENST00000473404 255 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AL135752.1-201ENST00000479477 471 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 RNU6-506P-201ENST00000516553 94 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 RNU6-677P-201ENST00000516914 101 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AP001893.2-201ENST00000526949 202 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AP003033.1-201ENST00000527244 415 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 ZNF519P2-201ENST00000557032 169 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 HMGB1P6-201ENST00000569046 646 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AL359880.1-201ENST00000621879 266 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 AF117829.1-206ENST00000621883 3802 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 IGHVIII-44-202ENST00000636235 289 ntBASIC3.25□□□□□ -1.89
COL28A1Q2UY09 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL28A1Q2UY09 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 RPL7P26-201ENST00000333817 754 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 RNU4-48P-201ENST00000365559 182 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 Y_RNA.516-201ENST00000384541 124 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 MIR1-2-201ENST00000384961 85 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 MIR181A1-201ENST00000385026 110 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 MTCO3P40-201ENST00000392516 676 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 U3.39-201ENST00000408569 239 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 DPPA2P1-201ENST00000428060 556 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 DDX3P2-201ENST00000446138 111 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AC093392.2-201ENST00000450682 337 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AL356010.1-201ENST00000456364 102 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 MRPS17P3-201ENST00000465453 385 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AC092185.1-201ENST00000491371 97 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 APOOP4-201ENST00000513530 597 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 OR4R1P-201ENST00000529879 463 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 OR5B19P-201ENST00000531766 928 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms