Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.53□□□□□ -1.84
CTCFP49711 AC009969.1-201ENST00000438726 172 ntBASIC3.53□□□□□ -1.84
CTCFP49711 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.53□□□□□ -1.84
CTCFP49711 MTND1P27-201ENST00000451117 902 ntBASIC3.53□□□□□ -1.84
CTCFP49711 AL359385.1-201ENST00000456509 365 ntBASIC3.53□□□□□ -1.84
CTCFP49711 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.53□□□□□ -1.84
CTCFP49711 SCARNA15.2-201ENST00000516409 127 ntBASIC3.53□□□□□ -1.84
CTCFP49711 SNORA18.6-201ENST00000516792 115 ntBASIC3.53□□□□□ -1.84
CTCFP49711 NRON-201ENST00000517270 370 ntBASIC3.53□□□□□ -1.84
CTCFP49711 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.53□□□□□ -1.84
CTCFP49711 MIR4528-201ENST00000577763 90 ntBASIC3.53□□□□□ -1.84
CTCFP49711 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.53□□□□□ -1.84
CTCFP49711 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.53□□□□□ -1.84
CTCFP49711 AC008277.2-201ENST00000605196 797 ntBASIC3.53□□□□□ -1.84
CTCFP49711 uc_338.25-201ENST00000613756 156 ntBASIC3.53□□□□□ -1.84
CTCFP49711 AP003122.6-201ENST00000623831 495 ntBASIC3.53□□□□□ -1.84
CTCFP49711 AC092656.1-203ENST00000624134 423 ntBASIC3.53□□□□□ -1.84
CTCFP49711 PISRT1-201ENST00000626175 531 ntBASIC3.53□□□□□ -1.84
CTCFP49711 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CTCFP49711 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.53□□□□□ -1.84
CTCFP49711 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CTCFP49711 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.52□□□□□ -1.85
CTCFP49711 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
CTCFP49711 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
CTCFP49711 RNU6-1284P-201ENST00000363701 100 ntBASIC3.52□□□□□ -1.85
CTCFP49711 RNU6-1119P-201ENST00000384349 108 ntBASIC3.52□□□□□ -1.85
CTCFP49711 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CTCFP49711 RPS4XP3-201ENST00000398541 413 ntBASIC3.52□□□□□ -1.85
CTCFP49711 MIR1287-201ENST00000408492 90 ntBASIC3.52□□□□□ -1.85
CTCFP49711 RNU2-62P-201ENST00000410868 191 ntBASIC3.52□□□□□ -1.85
CTCFP49711 HSPE1P1-201ENST00000421494 318 ntBASIC3.52□□□□□ -1.85
CTCFP49711 USP12PX-201ENST00000432383 1057 ntBASIC3.52□□□□□ -1.85
CTCFP49711 MTATP6P30-201ENST00000443540 664 ntBASIC3.52□□□□□ -1.85
CTCFP49711 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.52□□□□□ -1.85
CTCFP49711 TPT1P7-201ENST00000458300 517 ntBASIC3.52□□□□□ -1.85
CTCFP49711 RNA5SP310-201ENST00000459084 116 ntBASIC3.52□□□□□ -1.85
CTCFP49711 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.52□□□□□ -1.85
CTCFP49711 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CTCFP49711 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.52□□□□□ -1.85
CTCFP49711 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.52□□□□□ -1.85
CTCFP49711 AL355836.1-201ENST00000555951 870 ntBASIC3.52□□□□□ -1.85
CTCFP49711 AC137800.2-201ENST00000574375 120 ntBASIC3.52□□□□□ -1.85
CTCFP49711 MIR3682-201ENST00000581338 84 ntBASIC3.52□□□□□ -1.85
CTCFP49711 DUXAP4-201ENST00000603046 613 ntBASIC3.52□□□□□ -1.85
CTCFP49711 AC006566.1-201ENST00000608943 513 ntBASIC3.52□□□□□ -1.85
CTCFP49711 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.52□□□□□ -1.85
CTCFP49711 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.52□□□□□ -1.85
CTCFP49711 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.52□□□□□ -1.85
CTCFP49711 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.52□□□□□ -1.85
CTCFP49711 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.52□□□□□ -1.85
CTCFP49711 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CTCFP49711 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.51□□□□□ -1.85
CTCFP49711 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CTCFP49711 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CTCFP49711 FARSBP1-201ENST00000435808 1778 ntBASIC3.51□□□□□ -1.85
CTCFP49711 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.51□□□□□ -1.85
CTCFP49711 Y_RNA.194-201ENST00000363985 102 ntBASIC3.51□□□□□ -1.85
CTCFP49711 Y_RNA.338-201ENST00000365320 114 ntBASIC3.51□□□□□ -1.85
CTCFP49711 MIR34A-201ENST00000385130 110 ntBASIC3.51□□□□□ -1.85
CTCFP49711 RNU6-195P-201ENST00000411352 109 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 MORF4L1P6-201ENST00000418771 268 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC245291.1-201ENST00000419501 328 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC007283.2-201ENST00000424739 197 ntBASIC3.51□□□□□ -1.85
CTCFP49711 RPL7L1P10-201ENST00000427790 463 ntBASIC3.51□□□□□ -1.85
CTCFP49711 ARL5AP4-201ENST00000430731 512 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC104850.1-201ENST00000435940 476 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.51□□□□□ -1.85
CTCFP49711 NDUFB4P6-201ENST00000436819 366 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 MTCO2P29-201ENST00000465212 189 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 MTCO3P7-201ENST00000510008 774 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.51□□□□□ -1.85
CTCFP49711 ARL2BPP2-201ENST00000550907 489 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.51□□□□□ -1.85
CTCFP49711 MIR3913-1-201ENST00000577744 102 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.51□□□□□ -1.85
CTCFP49711 AC013553.2-201ENST00000604244 589 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC098614.4-201ENST00000607601 462 ntBASIC3.51□□□□□ -1.85
CTCFP49711 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.51□□□□□ -1.85
CTCFP49711 AC109347.2-201ENST00000610220 349 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC110994.2-201ENST00000635481 492 ntBASIC3.51□□□□□ -1.85
CTCFP49711 AC241585.2-209ENST00000638217 143 ntBASIC3.51□□□□□ -1.85
CTCFP49711 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
CTCFP49711 AC092435.3-201ENST00000565538 3654 ntBASIC3.51□□□□□ -1.85
CTCFP49711 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CTCFP49711 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.5□□□□□ -1.85
CTCFP49711 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
CTCFP49711 SNORA14A-201ENST00000364773 135 ntBASIC3.5□□□□□ -1.85
CTCFP49711 SNORA67.4-201ENST00000384688 142 ntBASIC3.5□□□□□ -1.85
CTCFP49711 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.5□□□□□ -1.85
CTCFP49711 MIR1289-2-201ENST00000408360 111 ntBASIC3.5□□□□□ -1.85
CTCFP49711 RN7SKP140-201ENST00000411196 284 ntBASIC3.5□□□□□ -1.85
CTCFP49711 NDUFB4P5-201ENST00000415445 361 ntBASIC3.5□□□□□ -1.85
CTCFP49711 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms