Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.94□□□□□ -1.78
MSX2P35548 AC090774.1-201ENST00000435925 246 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.94□□□□□ -1.78
MSX2P35548 U8.20-201ENST00000459445 131 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RN7SL481P-201ENST00000477764 299 ntBASIC3.94□□□□□ -1.78
MSX2P35548 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.94□□□□□ -1.78
MSX2P35548 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.94□□□□□ -1.78
MSX2P35548 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.94□□□□□ -1.78
MSX2P35548 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.94□□□□□ -1.78
MSX2P35548 AC020593.1-201ENST00000507399 299 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AC096745.1-201ENST00000509945 370 ntBASIC3.94□□□□□ -1.78
MSX2P35548 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSX2P35548 AC104136.1-201ENST00000512969 394 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RNU6-1095P-201ENST00000516148 108 ntBASIC3.94□□□□□ -1.78
MSX2P35548 SCARNA16.2-201ENST00000516520 172 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RNU6-635P-201ENST00000516651 102 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RNU6-352P-201ENST00000516908 107 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RN7SKP60-201ENST00000516985 239 ntBASIC3.94□□□□□ -1.78
MSX2P35548 RAB9BP1-201ENST00000519581 626 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AC087854.1-201ENST00000519706 414 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AP000827.1-201ENST00000527814 258 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.94□□□□□ -1.78
MSX2P35548 AC026371.1-201ENST00000551867 419 ntBASIC3.94□□□□□ -1.78
MSX2P35548 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.94□□□□□ -1.78
MSX2P35548 AC091042.1-201ENST00000579213 173 ntBASIC3.94□□□□□ -1.78
MSX2P35548 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.94□□□□□ -1.78
MSX2P35548 AC104763.2-201ENST00000604179 382 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AL161423.1-201ENST00000613700 262 ntBASIC3.94□□□□□ -1.78
MSX2P35548 uc_338.32-201ENST00000615087 172 ntBASIC3.94□□□□□ -1.78
MSX2P35548 AL450472.3-201ENST00000615578 367 ntBASIC3.94□□□□□ -1.78
MSX2P35548 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSX2P35548 AL158163.1-201ENST00000603915 1649 ntBASIC3.94□□□□□ -1.78
MSX2P35548 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSX2P35548 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
MSX2P35548 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSX2P35548 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.94□□□□□ -1.78
MSX2P35548 AC010733.2-201ENST00000589496 5702 ntBASIC3.94□□□□□ -1.78
MSX2P35548 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.93□□□□□ -1.78
MSX2P35548 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 AC125257.1-201ENST00000560400 2930 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC005592.1-201ENST00000566527 1640 ntBASIC3.93□□□□□ -1.78
MSX2P35548 MIR192-201ENST00000384915 110 ntBASIC3.93□□□□□ -1.78
MSX2P35548 MIR1179-201ENST00000408703 91 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC011933.1-201ENST00000413334 321 ntBASIC3.93□□□□□ -1.78
MSX2P35548 PPP1R11P2-201ENST00000423543 382 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.93□□□□□ -1.78
MSX2P35548 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.93□□□□□ -1.78
MSX2P35548 RPL23AP81-201ENST00000455252 467 ntBASIC3.93□□□□□ -1.78
MSX2P35548 SNRPGP5-201ENST00000456003 220 ntBASIC3.93□□□□□ -1.78
MSX2P35548 HMGB1P22-201ENST00000505315 124 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC022493.2-201ENST00000506122 481 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC009901.1-201ENST00000506703 541 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 AC005921.1-201ENST00000510589 286 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 FTH1P9-201ENST00000513251 355 ntBASIC3.93□□□□□ -1.78
MSX2P35548 RNU6-390P-201ENST00000516259 103 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.93□□□□□ -1.78
MSX2P35548 AP006289.1-201ENST00000538089 277 ntBASIC3.93□□□□□ -1.78
MSX2P35548 GNAI2P1-201ENST00000541815 315 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.93□□□□□ -1.78
MSX2P35548 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.93□□□□□ -1.78
MSX2P35548 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.93□□□□□ -1.78
MSX2P35548 RPL23AP87-202ENST00000573039 466 ntBASIC3.93□□□□□ -1.78
MSX2P35548 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.93□□□□□ -1.78
MSX2P35548 MIR4697-201ENST00000582977 78 ntBASIC3.93□□□□□ -1.78
MSX2P35548 MIR4737-201ENST00000583979 81 ntBASIC3.93□□□□□ -1.78
MSX2P35548 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
MSX2P35548 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 AL161616.1-201ENST00000611867 286 ntBASIC3.93□□□□□ -1.78
MSX2P35548 AP000346.3-201ENST00000622821 210 ntBASIC3.93□□□□□ -1.78
MSX2P35548 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.93□□□□□ -1.78
MSX2P35548 MAPK10-263ENST00000641052 4307 ntBASIC3.93□□□□□ -1.78
MSX2P35548 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.93□□□□□ -1.78
MSX2P35548 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX2P35548 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSX2P35548 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
MSX2P35548 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSX2P35548 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSX2P35548 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.92□□□□□ -1.78
MSX2P35548 RNU6-1059P-201ENST00000363752 98 ntBASIC3.92□□□□□ -1.78
MSX2P35548 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
MSX2P35548 SSXP9-201ENST00000417503 292 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AL160275.3-201ENST00000423876 471 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AL157831.1-201ENST00000426134 473 ntBASIC3.92□□□□□ -1.78
MSX2P35548 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSX2P35548 USP9YP16-201ENST00000430287 407 ntBASIC3.92□□□□□ -1.78
MSX2P35548 AC016712.1-201ENST00000431088 378 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms