Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL8A1P27658 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.58□□□□□ -1.68
COL8A1P27658 PPP1R11P2-201ENST00000423543 382 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 AC096638.1-201ENST00000444678 216 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 AC005042.3-201ENST00000453230 174 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 PPIAP21-201ENST00000464473 501 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 AP000870.1-201ENST00000472927 406 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 FTH1P24-201ENST00000503502 462 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.58□□□□□ -1.68
COL8A1P27658 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.58□□□□□ -1.68
COL8A1P27658 AC006499.6-201ENST00000511169 607 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 APOOP4-201ENST00000513530 597 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.58□□□□□ -1.68
COL8A1P27658 MIR3667-201ENST00000581025 74 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.58□□□□□ -1.68
COL8A1P27658 U7.2-201ENST00000607576 63 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 AL450472.3-201ENST00000615578 367 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
COL8A1P27658 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
COL8A1P27658 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.58□□□□□ -1.68
COL8A1P27658 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.58□□□□□ -1.68
COL8A1P27658 Z95331.1-201ENST00000623075 23112 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.58□□□□□ -1.68
COL8A1P27658 AC139713.2-214ENST00000642059 1811 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
COL8A1P27658 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC4.57□□□□□ -1.68
COL8A1P27658 AC005224.3-201ENST00000584683 2140 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.57□□□□□ -1.68
COL8A1P27658 Y_RNA.33-201ENST00000362591 102 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 RNU4-80P-201ENST00000363200 141 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 U3.10-201ENST00000364459 214 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 RNA5SP428-201ENST00000365129 132 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AL359837.1-201ENST00000381357 287 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 RNU6-339P-201ENST00000384310 107 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 SNORA37-201ENST00000384504 129 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
COL8A1P27658 RNU6-578P-201ENST00000390980 103 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 RNU6-381P-201ENST00000391259 108 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 RPL11P3-201ENST00000395256 523 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 UBA52P6-201ENST00000399822 382 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 RPL7AP25-201ENST00000423357 805 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AL592045.1-201ENST00000429867 352 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 BX276092.6-201ENST00000430476 250 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 COX6B1P7-201ENST00000430845 235 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AC090774.1-201ENST00000435925 246 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.57□□□□□ -1.68
COL8A1P27658 BX276092.8-201ENST00000455722 250 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.57□□□□□ -1.68
COL8A1P27658 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 RPL23AP75-201ENST00000491601 451 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AC104164.2-201ENST00000496953 495 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 GLUD1P3-202ENST00000508551 200 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 AC022968.1-201ENST00000567372 442 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 MIR4744-201ENST00000581563 82 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AC005176.2-201ENST00000596933 147 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AC008121.1-201ENST00000603244 268 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AL391358.1-201ENST00000605342 190 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AC022441.3-201ENST00000605737 136 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 AC010632.3-201ENST00000611377 369 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.57□□□□□ -1.68
COL8A1P27658 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.57□□□□□ -1.68
COL8A1P27658 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.57□□□□□ -1.68
COL8A1P27658 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.57□□□□□ -1.68
COL8A1P27658 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
COL8A1P27658 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 AL451142.2-201ENST00000429076 2090 ntBASIC4.57□□□□□ -1.68
COL8A1P27658 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL8A1P27658 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL8A1P27658 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.56□□□□□ -1.68
COL8A1P27658 AC092079.1-201ENST00000558620 1985 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.56□□□□□ -1.68
COL8A1P27658 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.56□□□□□ -1.68
COL8A1P27658 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.56□□□□□ -1.68
COL8A1P27658 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 NCAPGP1-201ENST00000505112 1814 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms