Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ATP5JP1-201ENST00000431631 322 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 MTATP6P16-201ENST00000434543 526 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.06□□□□□ -1.76
HMGB1P09429 AC004383.1-201ENST00000438135 289 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.06□□□□□ -1.76
HMGB1P09429 RPL21P23-201ENST00000446654 460 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.06□□□□□ -1.76
HMGB1P09429 CENPBD1P1-201ENST00000464061 469 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 MTND4P2-201ENST00000507767 1203 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 RNU1-45P-201ENST00000517191 141 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 AC026403.1-201ENST00000518938 295 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.06□□□□□ -1.76
HMGB1P09429 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.06□□□□□ -1.76
HMGB1P09429 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.06□□□□□ -1.76
HMGB1P09429 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.06□□□□□ -1.76
HMGB1P09429 AC025678.1-201ENST00000567861 338 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.06□□□□□ -1.76
HMGB1P09429 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.06□□□□□ -1.76
HMGB1P09429 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 AL359854.1-201ENST00000614203 1594 ntBASIC4.06□□□□□ -1.76
HMGB1P09429 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.06□□□□□ -1.76
HMGB1P09429 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
HMGB1P09429 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HMGB1P09429 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4.05□□□□□ -1.76
HMGB1P09429 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HMGB1P09429 MIR30E-201ENST00000362104 92 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 Y_RNA.126-201ENST00000363382 111 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 RNU6-61P-201ENST00000365528 109 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 SNORA75B-201ENST00000384053 137 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 RNU6-220P-201ENST00000390919 107 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 SNORA26.7-201ENST00000391288 122 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AL139039.1-201ENST00000401900 692 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGB1P09429 SDCBPP3-201ENST00000419629 891 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 MYL8P-204ENST00000431574 518 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGB1P09429 RPS20P5-201ENST00000434808 360 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.05□□□□□ -1.76
HMGB1P09429 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGB1P09429 RPS15AP9-201ENST00000439856 381 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGB1P09429 MTND1P27-201ENST00000451117 902 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC006539.3-201ENST00000454258 129 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 RN7SL542P-201ENST00000467147 294 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC126389.1-201ENST00000477436 290 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGB1P09429 SCARNA3-201ENST00000517097 143 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC090572.1-201ENST00000519251 160 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGB1P09429 RANP3-201ENST00000530970 276 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGB1P09429 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HMGB1P09429 MIR548AC-201ENST00000585049 88 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AP000787.2-201ENST00000604432 568 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC064872.1-201ENST00000604823 1072 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGB1P09429 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.05□□□□□ -1.76
HMGB1P09429 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGB1P09429 U6.42-201ENST00000618440 107 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.05□□□□□ -1.76
HMGB1P09429 MIR7157-201ENST00000635801 60 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 AC012442.3-202ENST00000636742 206 ntBASIC4.05□□□□□ -1.76
HMGB1P09429 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HMGB1P09429 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGB1P09429 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.05□□□□□ -1.76
HMGB1P09429 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
HMGB1P09429 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGB1P09429 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGB1P09429 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HMGB1P09429 RNU6-858P-201ENST00000362436 107 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 AL133475.1-201ENST00000404414 305 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 AC126124.2-201ENST00000413542 321 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGB1P09429 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGB1P09429 AC073063.1-201ENST00000434352 607 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGB1P09429 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGB1P09429 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.04□□□□□ -1.76
HMGB1P09429 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGB1P09429 AC022493.1-201ENST00000492984 337 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 FCF1P8-201ENST00000510322 597 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 RNU6-410P-201ENST00000517006 107 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGB1P09429 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HMGB1P09429 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGB1P09429 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.04□□□□□ -1.76
HMGB1P09429 AL020997.2-201ENST00000602607 184 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 AL022154.1-201ENST00000604698 785 ntBASIC4.04□□□□□ -1.76
HMGB1P09429 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HMGB1P09429 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HMGB1P09429 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.04□□□□□ -1.76
HMGB1P09429 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.03□□□□□ -1.76
HMGB1P09429 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.03□□□□□ -1.76
HMGB1P09429 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HMGB1P09429 SNORD3E-201ENST00000362899 217 ntBASIC4.03□□□□□ -1.76
HMGB1P09429 RNU6-748P-201ENST00000384648 107 ntBASIC4.03□□□□□ -1.76
HMGB1P09429 RNU6-1179P-201ENST00000384667 107 ntBASIC4.03□□□□□ -1.76
HMGB1P09429 MIR218-2-201ENST00000385006 110 ntBASIC4.03□□□□□ -1.76
HMGB1P09429 SNORD17-201ENST00000390930 237 ntBASIC4.03□□□□□ -1.76
HMGB1P09429 AC016831.2-201ENST00000417179 352 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms