Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.88□□□□□ -1.95
SIX3O95343 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.88□□□□□ -1.95
SIX3O95343 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.88□□□□□ -1.95
SIX3O95343 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.88□□□□□ -1.95
SIX3O95343 Y_RNA.672-201ENST00000516289 104 ntBASIC2.88□□□□□ -1.95
SIX3O95343 RNA5SP337-201ENST00000517007 109 ntBASIC2.88□□□□□ -1.95
SIX3O95343 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.88□□□□□ -1.95
SIX3O95343 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.88□□□□□ -1.95
SIX3O95343 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.88□□□□□ -1.95
SIX3O95343 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.88□□□□□ -1.95
SIX3O95343 RPL21P5-201ENST00000554662 472 ntBASIC2.88□□□□□ -1.95
SIX3O95343 H3F3AP1-201ENST00000559984 334 ntBASIC2.88□□□□□ -1.95
SIX3O95343 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.88□□□□□ -1.95
SIX3O95343 AC010546.1-201ENST00000569391 485 ntBASIC2.88□□□□□ -1.95
SIX3O95343 MIR5004-201ENST00000579078 107 ntBASIC2.88□□□□□ -1.95
SIX3O95343 AC015871.2-201ENST00000603605 948 ntBASIC2.88□□□□□ -1.95
SIX3O95343 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.88□□□□□ -1.95
SIX3O95343 AL162274.2-201ENST00000614406 332 ntBASIC2.88□□□□□ -1.95
SIX3O95343 AC108479.2-201ENST00000617314 601 ntBASIC2.88□□□□□ -1.95
SIX3O95343 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.88□□□□□ -1.95
SIX3O95343 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.88□□□□□ -1.95
SIX3O95343 AC025048.6-202ENST00000627667 438 ntBASIC2.88□□□□□ -1.95
SIX3O95343 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
SIX3O95343 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
SIX3O95343 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
SIX3O95343 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
SIX3O95343 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SIX3O95343 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.88□□□□□ -1.95
SIX3O95343 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.88□□□□□ -1.95
SIX3O95343 MTND4P35-201ENST00000604257 1375 ntBASIC2.87□□□□□ -1.95
SIX3O95343 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.87□□□□□ -1.95
SIX3O95343 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.87□□□□□ -1.95
SIX3O95343 RNU5E-6P-201ENST00000365574 115 ntBASIC2.87□□□□□ -1.95
SIX3O95343 RNU6-190P-201ENST00000384154 102 ntBASIC2.87□□□□□ -1.95
SIX3O95343 MIR181B1-201ENST00000385240 110 ntBASIC2.87□□□□□ -1.95
SIX3O95343 RN7SKP58-201ENST00000411010 305 ntBASIC2.87□□□□□ -1.95
SIX3O95343 RPS12P24-201ENST00000412619 387 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AL451074.5-201ENST00000415894 435 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC003685.2-201ENST00000422795 395 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC098614.2-201ENST00000426040 255 ntBASIC2.87□□□□□ -1.95
SIX3O95343 RPS29P6-201ENST00000438196 145 ntBASIC2.87□□□□□ -1.95
SIX3O95343 UBBP3-201ENST00000445497 241 ntBASIC2.87□□□□□ -1.95
SIX3O95343 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.87□□□□□ -1.95
SIX3O95343 WASF1P1-201ENST00000447560 1131 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AL513124.1-201ENST00000450410 614 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.87□□□□□ -1.95
SIX3O95343 RPL39P36-201ENST00000490784 156 ntBASIC2.87□□□□□ -1.95
SIX3O95343 NDUFB4P2-201ENST00000509515 391 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.87□□□□□ -1.95
SIX3O95343 FABP5P5-201ENST00000515537 406 ntBASIC2.87□□□□□ -1.95
SIX3O95343 RNA5SP385-201ENST00000515947 110 ntBASIC2.87□□□□□ -1.95
SIX3O95343 RNU6-56P-201ENST00000516986 93 ntBASIC2.87□□□□□ -1.95
SIX3O95343 RN7SKP272-201ENST00000516988 232 ntBASIC2.87□□□□□ -1.95
SIX3O95343 HMGB1P41-201ENST00000520234 440 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.87□□□□□ -1.95
SIX3O95343 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.87□□□□□ -1.95
SIX3O95343 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.87□□□□□ -1.95
SIX3O95343 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.87□□□□□ -1.95
SIX3O95343 MIR4506-201ENST00000584693 77 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC012065.4-201ENST00000602445 679 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC138749.5-201ENST00000611461 208 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AL020991.1-201ENST00000612314 373 ntBASIC2.87□□□□□ -1.95
SIX3O95343 AC116165.2-201ENST00000616705 206 ntBASIC2.87□□□□□ -1.95
SIX3O95343 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SIX3O95343 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.87□□□□□ -1.95
SIX3O95343 AC026241.1-201ENST00000517873 2142 ntBASIC2.87□□□□□ -1.95
SIX3O95343 ELF2P3-201ENST00000445099 1506 ntBASIC2.87□□□□□ -1.95
SIX3O95343 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SIX3O95343 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
SIX3O95343 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.87□□□□□ -1.95
SIX3O95343 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
SIX3O95343 AC110491.1-201ENST00000562191 2010 ntBASIC2.86□□□□□ -1.95
SIX3O95343 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.86□□□□□ -1.95
SIX3O95343 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.86□□□□□ -1.95
SIX3O95343 AC073343.1-201ENST00000328239 651 ntBASIC2.86□□□□□ -1.95
SIX3O95343 RNU6-511P-201ENST00000363496 107 ntBASIC2.86□□□□□ -1.95
SIX3O95343 RNU6-188P-201ENST00000364207 107 ntBASIC2.86□□□□□ -1.95
SIX3O95343 SNORD56.5-201ENST00000364281 72 ntBASIC2.86□□□□□ -1.95
SIX3O95343 RNY4P34-201ENST00000364779 95 ntBASIC2.86□□□□□ -1.95
SIX3O95343 RNU6-1180P-201ENST00000364935 107 ntBASIC2.86□□□□□ -1.95
SIX3O95343 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
SIX3O95343 RPL5P18-201ENST00000406671 891 ntBASIC2.86□□□□□ -1.95
SIX3O95343 RN7SKP123-201ENST00000410732 291 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AC127391.1-201ENST00000411737 98 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AC023141.4-201ENST00000412031 328 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AC007283.2-201ENST00000424739 197 ntBASIC2.86□□□□□ -1.95
SIX3O95343 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX3O95343 NANOGNBP1-201ENST00000448444 480 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.86□□□□□ -1.95
SIX3O95343 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX3O95343 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.86□□□□□ -1.95
SIX3O95343 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.86□□□□□ -1.95
SIX3O95343 AC109486.1-201ENST00000486833 374 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AC080014.1-201ENST00000496877 1201 ntBASIC2.86□□□□□ -1.95
SIX3O95343 SNORA31.3-201ENST00000516029 96 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX3O95343 AP003467.2-201ENST00000520175 319 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AL359212.1-201ENST00000556608 614 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AC137800.2-201ENST00000574375 120 ntBASIC2.86□□□□□ -1.95
SIX3O95343 AC103810.1-201ENST00000579873 453 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms