Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC008065.1-201ENST00000428525 348 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RPL23AP1-201ENST00000428990 471 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC011998.1-201ENST00000433403 117 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC098831.1-201ENST00000440661 216 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 TMSB4XP3-201ENST00000445144 114 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 MTCO3P8-201ENST00000453691 755 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AL139109.1-201ENST00000455491 297 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RPL35AP15-201ENST00000468042 339 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC087879.1-201ENST00000474343 374 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 TRBVB-201ENST00000477100 408 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC093852.1-201ENST00000503587 266 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RNU5B-3P-201ENST00000516601 115 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RNU6-1212P-201ENST00000517023 104 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC106782.4-201ENST00000568264 210 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AC006557.5-201ENST00000603126 811 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RPL23AP92-201ENST00000603609 255 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 U2.17-201ENST00000611454 95 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AL596245.1-201ENST00000618994 362 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 NOL8P1-201ENST00000508336 3529 ntBASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC39Q9UFE4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
CCDC39Q9UFE4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC39Q9UFE4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC39Q9UFE4 RNA5SP175-201ENST00000364275 119 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 Y_RNA.506-201ENST00000384494 102 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AC097374.1-203ENST00000400783 485 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 MIR548H3-201ENST00000408771 118 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 SNORA3C-201ENST00000408792 125 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 RPLP0P7-201ENST00000416050 667 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 DNAJC19P7-201ENST00000428811 344 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 RPS26P56-201ENST00000444468 240 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AP001992.1-205ENST00000462248 379 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AC026801.1-201ENST00000497178 464 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 SNORA40.15-201ENST00000516884 107 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 FAM60DP-201ENST00000524174 632 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 MIR4504-201ENST00000577413 92 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AC010900.2-201ENST00000604508 210 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 uc_338.13-201ENST00000618243 179 ntBASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC39Q9UFE4 AC008669.1-201ENST00000565823 2178 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 Z73965.1-201ENST00000623412 2297 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC103710.2-202ENST00000641454 2853 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 RNA5SP505-201ENST00000364748 108 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 SNORD50B-201ENST00000364995 70 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 RNU5E-6P-201ENST00000365574 115 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 RNU6-842P-201ENST00000384269 107 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 SNORA11F-201ENST00000408237 128 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 HMGN1P24-201ENST00000412282 298 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 RPS15AP40-201ENST00000419621 391 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 RPL23AP69-201ENST00000431134 458 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 FCF1P4-201ENST00000448326 183 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC117503.1-201ENST00000472241 394 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC108145.1-201ENST00000503770 153 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC090517.1-201ENST00000569307 266 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AL021997.2-201ENST00000615674 271 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AL136313.1-201ENST00000624804 202 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AL139811.1-201ENST00000424779 2299 ntBASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC39Q9UFE4 AC025031.4-201ENST00000621248 3271 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 MIR331-201ENST00000362302 94 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 RNU6-398P-201ENST00000384143 109 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 MIR192-201ENST00000384915 110 ntBASIC4.88□□□□□ -1.63
CCDC39Q9UFE4 SNORA16.2-201ENST00000390991 127 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms