Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AL163153.1-201ENST00000554223 283 ntBASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 MIR5187-201ENST00000583479 76 ntBASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC243960.4-201ENST00000600532 288 ntBASIC3.84□□□□□ -1.79
DKK3Q9UBP4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC090574.1-201ENST00000623186 233 ntBASIC3.84□□□□□ -1.79
DKK3Q9UBP4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 AC012442.3-202ENST00000636742 206 ntBASIC3.84□□□□□ -1.79
DKK3Q9UBP4 TPTEP1-208ENST00000636884 213 ntBASIC3.84□□□□□ -1.79
DKK3Q9UBP4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.84□□□□□ -1.79
DKK3Q9UBP4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.84□□□□□ -1.8
DKK3Q9UBP4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.84□□□□□ -1.8
DKK3Q9UBP4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
DKK3Q9UBP4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 SNORD115-7-201ENST00000365306 82 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 RNU6-61P-201ENST00000365528 109 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 FAT1P1-201ENST00000406588 507 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL606923.1-201ENST00000406616 190 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 Y_RNA.615-201ENST00000410769 117 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 Z92545.1-201ENST00000411782 234 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 RPL21P24-201ENST00000413752 448 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 OR6C66P-201ENST00000414917 930 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 UBE2FP1-201ENST00000416536 447 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL353678.1-201ENST00000422735 741 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 MTCO3P45-201ENST00000443036 613 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL500522.2-201ENST00000448562 343 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 MTND4LP22-201ENST00000508209 276 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 FAM206BP-201ENST00000510179 541 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 RNU6-277P-201ENST00000516272 106 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 Y_RNA.691-201ENST00000516611 103 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 BTF3P12-201ENST00000519620 469 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 IGHV3-76-201ENST00000522465 295 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC090877.1-201ENST00000561418 344 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 MIR4742-201ENST00000581069 85 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC012669.1-201ENST00000603209 283 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL670379.6-201ENST00000603753 252 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL670379.11-201ENST00000604059 253 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC008162.1-201ENST00000604718 254 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL670379.1-201ENST00000604752 252 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL670379.5-201ENST00000605253 252 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL670379.12-201ENST00000605291 253 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL670379.8-201ENST00000605353 252 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL670379.7-201ENST00000605823 252 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AL050343.2-201ENST00000607338 280 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC064836.2-201ENST00000609491 462 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 AC025034.2-201ENST00000623264 286 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 U6.114-201ENST00000636407 96 ntBASIC3.83□□□□□ -1.8
DKK3Q9UBP4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.83□□□□□ -1.8
DKK3Q9UBP4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 AC103710.2-202ENST00000641454 2853 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 AL672296.1-201ENST00000427780 2158 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 RNU6-1249P-201ENST00000363237 111 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 RNU6-522P-201ENST00000364497 107 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 SNORA32.2-201ENST00000384049 122 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 SNORA24.1-201ENST00000384401 135 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 U8.11-201ENST00000384699 133 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 U8.12-201ENST00000384701 133 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 MIR135A2-201ENST00000384854 100 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 snosnR66.1-201ENST00000391095 99 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 AL356057.2-201ENST00000403318 432 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 AL359634.1-202ENST00000404721 284 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 RNU4-78P-201ENST00000410940 126 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 AC114491.1-201ENST00000416095 246 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 RAC1P6-201ENST00000423911 575 ntBASIC3.82□□□□□ -1.8
DKK3Q9UBP4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.82□□□□□ -1.8
DKK3Q9UBP4 SAR1AP4-201ENST00000429225 591 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms