Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HMGB1P12-201ENST00000438594 598 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC104472.2-201ENST00000469035 601 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC087884.1-201ENST00000469738 328 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC099522.1-202ENST00000514718 367 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 MIR892C-201ENST00000516410 77 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 SNORA31.9-201ENST00000516429 84 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 RNU6-1153P-201ENST00000516760 105 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC025423.5-201ENST00000550230 219 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC100830.2-201ENST00000581636 240 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 MIR4697-201ENST00000582977 78 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 MIR5690-201ENST00000583739 73 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 NUTF2P8-201ENST00000604593 363 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AC005344.1-201ENST00000613391 459 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AL355365.1-201ENST00000616480 294 ntBASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
TRIM39Q9HCM9 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 FAM35BP-202ENST00000497389 3337 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AC090740.1-201ENST00000623193 2262 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RNU6-1303P-201ENST00000364841 107 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RNU6-1227P-201ENST00000383981 107 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RNU2-68P-201ENST00000410878 191 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RNU6-370P-201ENST00000411008 104 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RNA5SP39-201ENST00000411245 120 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 COX6B1P7-201ENST00000430845 235 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 NDUFB4P6-201ENST00000436819 366 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RPL7P28-201ENST00000437739 740 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RANP8-201ENST00000444720 713 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AC130509.1-201ENST00000464158 433 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AC022493.1-201ENST00000492984 337 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 PPBPP1-201ENST00000510807 373 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RNU1-54P-201ENST00000517181 120 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RN7SKP289-201ENST00000517244 295 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 MRPL49P2-201ENST00000521066 465 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AC133104.2-201ENST00000615272 193 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 RMST_4.1-201ENST00000616886 107 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AL713922.2-201ENST00000619384 716 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 AC090971.5-201ENST00000621102 293 ntBASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.18□□□□□ -1.74
TRIM39Q9HCM9 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 SNORA70C-201ENST00000384538 135 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 RNU6-601P-201ENST00000384540 107 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 RNY4P36-201ENST00000391116 96 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 MIR1179-201ENST00000408703 91 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AL354751.2-201ENST00000415471 210 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 UBE2V1P4-201ENST00000425374 344 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 CECR9-201ENST00000453421 199 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 RPS29P19-201ENST00000479709 171 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 RPS4XP13-201ENST00000483219 789 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AC096745.1-201ENST00000509945 370 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 Y_RNA.718-201ENST00000517110 102 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 TRAV37-201ENST00000553906 342 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AC025884.1-201ENST00000556034 378 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 OR1M4P-201ENST00000589199 287 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AC023043.4-201ENST00000612081 449 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AC084781.2-201ENST00000615568 161 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
TRIM39Q9HCM9 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 Y_RNA.324-201ENST00000365165 102 ntBASIC4.16□□□□□ -1.74
TRIM39Q9HCM9 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms