Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.13□□□□□ -2.07
USP42Q9H9J4 MIR3616-201ENST00000584070 92 ntBASIC2.13□□□□□ -2.07
USP42Q9H9J4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
USP42Q9H9J4 MTND4P27-201ENST00000450813 1354 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC005539.1-201ENST00000443768 1479 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
USP42Q9H9J4 MIR489-201ENST00000384923 84 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 MIR518E-201ENST00000385252 88 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 RNU4-72P-201ENST00000410754 173 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC007560.1-201ENST00000426912 237 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC092427.1-201ENST00000439177 601 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC2.12□□□□□ -2.07
USP42Q9H9J4 RPL39P6-201ENST00000448289 150 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC078857.1-201ENST00000469870 667 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 RNU6-840P-201ENST00000517275 65 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC022634.1-201ENST00000520765 532 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.12□□□□□ -2.07
USP42Q9H9J4 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC2.12□□□□□ -2.07
USP42Q9H9J4 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC138915.2-201ENST00000569776 97 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.12□□□□□ -2.07
USP42Q9H9J4 MIR6840-201ENST00000611937 71 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 AC012150.2-201ENST00000621300 544 ntBASIC2.12□□□□□ -2.07
USP42Q9H9J4 MTND4P23-201ENST00000447723 1363 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP42Q9H9J4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP42Q9H9J4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP42Q9H9J4 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC2.11□□□□□ -2.07
USP42Q9H9J4 SEPT2P1-201ENST00000419651 180 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 USP12PX-201ENST00000432383 1057 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC2.11□□□□□ -2.07
USP42Q9H9J4 Z82210.1-201ENST00000440037 231 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC124916.1-201ENST00000444020 547 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 Z73417.1-201ENST00000447373 778 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 ANKRD26P4-201ENST00000455755 950 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 SNRPGP9-201ENST00000456025 225 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC026410.2-201ENST00000460281 156 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 RPS29P20-201ENST00000489592 171 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC023141.11-201ENST00000508864 202 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
USP42Q9H9J4 RNA5SP291-201ENST00000517222 105 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC022861.1-201ENST00000522981 663 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC104581.2-201ENST00000572227 430 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.11□□□□□ -2.07
USP42Q9H9J4 AL158211.4-201ENST00000606988 584 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC135507.1-201ENST00000607214 561 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 uc_338.20-201ENST00000621563 178 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 AC097460.3-201ENST00000623099 442 ntBASIC2.11□□□□□ -2.07
USP42Q9H9J4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP42Q9H9J4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
USP42Q9H9J4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
USP42Q9H9J4 Y_RNA.25-201ENST00000362528 102 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 Y_RNA.327-201ENST00000365201 102 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 SUGT1P1-201ENST00000379514 476 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 MIR218-1-201ENST00000384999 110 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 MIR1276-201ENST00000408707 83 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 PPP1R11P2-201ENST00000423543 382 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 ZNF863P-201ENST00000426746 417 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 RPS15AP5-201ENST00000436276 388 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 MRPL42P4-201ENST00000453267 443 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 RPL26P9-201ENST00000457466 433 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.1□□□□□ -2.07
USP42Q9H9J4 AC008379.1-201ENST00000463655 464 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 AC097493.1-201ENST00000463958 372 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 AC121161.1-201ENST00000510606 652 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.1□□□□□ -2.07
USP42Q9H9J4 AC122134.1-202ENST00000569111 1201 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 AC011451.2-201ENST00000604303 598 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 SNORD14A-201ENST00000606526 91 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.1□□□□□ -2.07
USP42Q9H9J4 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.1□□□□□ -2.07
USP42Q9H9J4 AL159972.1-201ENST00000625150 448 ntBASIC2.1□□□□□ -2.07
USP42Q9H9J4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
USP42Q9H9J4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
USP42Q9H9J4 AL391987.6-201ENST00000305671 199 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 SNORA6-201ENST00000384033 151 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 RNU6-140P-201ENST00000384566 108 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 RNU6-920P-201ENST00000410926 92 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC023141.4-201ENST00000412031 328 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC092047.1-201ENST00000424997 240 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 SEPT7P5-201ENST00000434048 306 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC093155.1-201ENST00000440164 826 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 PGBD4P3-201ENST00000440731 581 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 BNIP3P2-201ENST00000441221 577 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 RPL12P25-201ENST00000455592 494 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AL121769.1-201ENST00000469473 401 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 RPS15AP17-201ENST00000470598 390 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC107626.1-201ENST00000471084 183 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC069528.1-202ENST00000482888 637 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC2.09□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms