Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC097462.2-201ENST00000504623 481 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 RNU1-104P-201ENST00000517280 175 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AC007954.1-201ENST00000554198 494 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 MIR4765-201ENST00000585007 77 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 ATP1B3P1-201ENST00000605365 821 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AC092447.7-201ENST00000422212 1621 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AC108206.1-201ENST00000570186 4159 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AC093536.2-201ENST00000565257 1406 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 EEF1A1P41-201ENST00000414667 207 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 AL591704.1-201ENST00000432574 275 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 UQCRHP3-201ENST00000451503 251 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 SCARNA13-201ENST00000516672 275 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 RNU6-1092P-201ENST00000516955 87 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 AC135628.1-201ENST00000568867 534 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 AC091152.3-201ENST00000604227 325 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 Z99129.2-201ENST00000619967 314 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 MTND5P42-201ENST00000637720 498 ntBASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHMP4AQ9BY43 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 RNU6-501P-201ENST00000364072 100 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 MIR23A-201ENST00000385245 73 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 RPS20P2-201ENST00000402520 389 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC080125.1-201ENST00000414888 684 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC245054.2-201ENST00000415639 319 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 HMGB3P12-201ENST00000438745 556 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC107083.1-201ENST00000439643 279 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 RNU7-26P-201ENST00000458980 63 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 LINC00888-204ENST00000487386 421 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC091826.1-201ENST00000514065 313 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC116347.2-201ENST00000514912 523 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 SCGB1D5P-201ENST00000515134 247 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC245166.1-201ENST00000521012 253 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AP001372.4-201ENST00000524889 472 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AP003122.3-201ENST00000526316 255 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC084851.1-201ENST00000529105 249 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 ELOCP32-201ENST00000548625 324 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC009163.5-201ENST00000575421 637 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC034229.4-201ENST00000607861 441 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 AC084035.1-201ENST00000634543 607 ntBASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.78□□□□□ -1.8
CHMP4AQ9BY43 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 HSPE1P11-201ENST00000339579 310 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 Y_RNA.97-201ENST00000363094 102 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 RNU6-511P-201ENST00000363496 107 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 RNU6-960P-201ENST00000364056 120 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 RNA5SP344-201ENST00000411081 104 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 RPS12P24-201ENST00000412619 387 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 BX276092.3-201ENST00000424182 230 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AC019097.1-201ENST00000424783 735 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 MTCO2P29-201ENST00000465212 189 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 MIR3199-1-201ENST00000582434 88 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AC022022.2-201ENST00000602989 360 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AC007619.2-201ENST00000605743 379 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AL359198.2-201ENST00000611836 194 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AC007318.2-201ENST00000620999 243 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 AP003400.5-201ENST00000624827 617 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 U6.99-201ENST00000637524 83 ntBASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
CHMP4AQ9BY43 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.76□□□□□ -1.81
CHMP4AQ9BY43 MIR524-201ENST00000385242 87 ntBASIC3.76□□□□□ -1.81
CHMP4AQ9BY43 RPL17P50-201ENST00000396131 546 ntBASIC3.76□□□□□ -1.81
CHMP4AQ9BY43 RN7SKP58-201ENST00000411010 305 ntBASIC3.76□□□□□ -1.81
CHMP4AQ9BY43 AC007064.1-201ENST00000412238 351 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms