Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
ERCC4Q92889 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
ERCC4Q92889 AP001350.1-201ENST00000601906 1524 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.31□□□□□ -1.72
ERCC4Q92889 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ERCC4Q92889 SNORD113-7-201ENST00000363762 77 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 Y_RNA.315-201ENST00000365117 102 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 RNA5SP167-201ENST00000365461 116 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 Y_RNA.399-201ENST00000383955 105 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 RNU6-76P-201ENST00000384060 104 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 MIR548K-201ENST00000408406 116 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 EI24P1-201ENST00000416584 867 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AL356095.1-201ENST00000417217 199 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC4.31□□□□□ -1.72
ERCC4Q92889 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.31□□□□□ -1.72
ERCC4Q92889 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.31□□□□□ -1.72
ERCC4Q92889 SCARNA18-201ENST00000459004 134 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AC078918.1-201ENST00000498515 228 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ERCC4Q92889 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.31□□□□□ -1.72
ERCC4Q92889 RNU6-352P-201ENST00000516908 107 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AP003072.1-201ENST00000531740 145 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AL121603.1-201ENST00000553815 142 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 RPL23AP84-201ENST00000571193 464 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.31□□□□□ -1.72
ERCC4Q92889 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.31□□□□□ -1.72
ERCC4Q92889 SNRPGP15-201ENST00000600149 222 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AC007619.2-201ENST00000605743 379 ntBASIC4.31□□□□□ -1.72
ERCC4Q92889 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC4.31□□□□□ -1.72
ERCC4Q92889 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ERCC4Q92889 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.31□□□□□ -1.72
ERCC4Q92889 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.3□□□□□ -1.72
ERCC4Q92889 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
ERCC4Q92889 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
ERCC4Q92889 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
ERCC4Q92889 PRO1804-201ENST00000623780 2050 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 CEP170P1-201ENST00000502249 4587 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
ERCC4Q92889 RNU6-335P-201ENST00000364563 113 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.3□□□□□ -1.72
ERCC4Q92889 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
ERCC4Q92889 EIF4E2P1-201ENST00000393781 255 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 HLFP1-201ENST00000402375 499 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AL590004.1-201ENST00000405321 300 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 RPL21P65-201ENST00000406094 466 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.3□□□□□ -1.72
ERCC4Q92889 AL121871.1-201ENST00000443413 436 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 RPL7P43-201ENST00000478876 753 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AC012181.1-201ENST00000479895 423 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 TRBVA-201ENST00000498804 316 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.3□□□□□ -1.72
ERCC4Q92889 AC023141.12-201ENST00000512399 199 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.3□□□□□ -1.72
ERCC4Q92889 RN7SKP258-201ENST00000517151 304 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AC022695.1-201ENST00000522089 237 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.3□□□□□ -1.72
ERCC4Q92889 AC090115.3-201ENST00000553218 849 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.3□□□□□ -1.72
ERCC4Q92889 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.3□□□□□ -1.72
ERCC4Q92889 AC092747.3-201ENST00000603769 301 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AL591034.3-201ENST00000605511 685 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.3□□□□□ -1.72
ERCC4Q92889 AC009570.1-201ENST00000609599 745 ntBASIC4.3□□□□□ -1.72
ERCC4Q92889 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.3□□□□□ -1.72
ERCC4Q92889 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
ERCC4Q92889 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
ERCC4Q92889 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
ERCC4Q92889 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
ERCC4Q92889 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
ERCC4Q92889 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ERCC4Q92889 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.29□□□□□ -1.72
ERCC4Q92889 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ERCC4Q92889 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ERCC4Q92889 RNU6-254P-201ENST00000363377 107 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 SNORD42.2-201ENST00000365570 69 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
ERCC4Q92889 SNORD116-29-201ENST00000384516 83 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 AL445189.1-201ENST00000405722 338 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 MTHFD2P2-201ENST00000407725 247 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 RNU4-14P-201ENST00000410858 122 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 MTATP6P4-201ENST00000427725 675 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.29□□□□□ -1.72
ERCC4Q92889 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.29□□□□□ -1.72
ERCC4Q92889 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.29□□□□□ -1.72
ERCC4Q92889 HMGN1P10-201ENST00000474557 553 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 RNU6-189P-201ENST00000516120 101 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 RNU6-123P-201ENST00000516163 102 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.29□□□□□ -1.72
ERCC4Q92889 AC020661.2-201ENST00000560114 134 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 FRG2DP-202ENST00000566967 323 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 AC093249.1-201ENST00000567049 203 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 MIR3160-1-201ENST00000577972 85 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 AC006270.2-201ENST00000578523 652 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 MIR3672-201ENST00000584290 82 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.29□□□□□ -1.72
ERCC4Q92889 DPPA3P3-201ENST00000603842 430 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 ZYXP1-201ENST00000617638 118 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 AC009812.4-201ENST00000569134 1805 ntBASIC4.29□□□□□ -1.72
ERCC4Q92889 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms