Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX4Q06945 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
SOX4Q06945 Y_RNA.237-201ENST00000364439 102 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 Y_RNA.274-201ENST00000364714 101 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 Y_RNA.297-201ENST00000364950 91 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 RNU6-708P-201ENST00000384217 107 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 Y_RNA.534-201ENST00000384599 112 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 AL353621.1-201ENST00000418219 243 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 RPS20P1-201ENST00000434853 354 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.71□□□□□ -1.66
SOX4Q06945 AC105137.1-201ENST00000484355 562 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.71□□□□□ -1.66
SOX4Q06945 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.71□□□□□ -1.66
SOX4Q06945 MIR5701-3-201ENST00000578890 82 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 MIR3910-1-201ENST00000580936 111 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 MIR5701-1-201ENST00000585138 82 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 RNF138P2-201ENST00000603490 592 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 MIR5701-2-201ENST00000615634 82 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 AL023881.1-201ENST00000621088 301 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.71□□□□□ -1.66
SOX4Q06945 MIR3653-201ENST00000625572 110 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 AC140479.6-201ENST00000633535 357 ntBASIC4.71□□□□□ -1.66
SOX4Q06945 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SOX4Q06945 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SOX4Q06945 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.71□□□□□ -1.66
SOX4Q06945 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
SOX4Q06945 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX4Q06945 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SOX4Q06945 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
SOX4Q06945 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.7□□□□□ -1.66
SOX4Q06945 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX4Q06945 AL391987.6-201ENST00000305671 199 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 MIR335-201ENST00000362173 94 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 Y_RNA.65-201ENST00000362846 100 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 RNU1-76P-201ENST00000362903 159 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 RNA5SP479-201ENST00000364858 117 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 RNU6-146P-201ENST00000384602 108 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 RNA5SP36-201ENST00000410197 133 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 AC096920.1-201ENST00000423991 241 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX4Q06945 RPS27AP12-201ENST00000429552 465 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 RPL23AP25-201ENST00000430973 463 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX4Q06945 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX4Q06945 AC133134.1-201ENST00000466800 359 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 RPL35AP15-201ENST00000468042 339 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 UQCRHP4-201ENST00000471686 272 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX4Q06945 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX4Q06945 RN7SKP21-201ENST00000516503 220 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 AC008489.1-201ENST00000524271 483 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX4Q06945 AC126177.3-201ENST00000551839 688 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 AC025884.1-201ENST00000556034 378 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX4Q06945 AL121917.1-203ENST00000605534 577 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX4Q06945 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX4Q06945 DDX18P3-201ENST00000404856 2007 ntBASIC4.7□□□□□ -1.66
SOX4Q06945 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX4Q06945 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SOX4Q06945 ZNF299P-201ENST00000406845 1804 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 AC090971.4-201ENST00000560291 1800 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SOX4Q06945 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SOX4Q06945 SAGE2P-201ENST00000420011 2126 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
SOX4Q06945 RNY1-201ENST00000364228 113 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 RNU6-886P-201ENST00000384319 105 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 MIR215-201ENST00000384858 110 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 RNU6-700P-201ENST00000391043 107 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 Y_RNA.592-201ENST00000410274 109 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 RPL7AP73-201ENST00000413490 353 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX4Q06945 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.69□□□□□ -1.66
SOX4Q06945 SDAD1P3-201ENST00000427380 333 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.69□□□□□ -1.66
SOX4Q06945 RANP8-201ENST00000444720 713 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 AL445433.1-201ENST00000457507 257 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC4.69□□□□□ -1.66
SOX4Q06945 AC008716.1-201ENST00000511084 513 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 MRPL49P2-201ENST00000521066 465 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX4Q06945 AP003730.1-201ENST00000524605 285 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX4Q06945 MIR4716-201ENST00000579628 84 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 RN7SL176P-201ENST00000580352 264 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 IPO5P1-202ENST00000600039 287 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 SNORD91B-202ENST00000608459 222 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 AC068724.3-201ENST00000625906 87 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SOX4Q06945 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX4Q06945 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SOX4Q06945 AL451142.2-201ENST00000429076 2090 ntBASIC4.69□□□□□ -1.66
SOX4Q06945 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX4Q06945 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SOX4Q06945 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.69□□□□□ -1.66
SOX4Q06945 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms