Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.8□□□□□ -2.12
FOXA1P55317 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA1P55317 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXA1P55317 AP001269.3-201ENST00000588718 329 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AL158827.2-201ENST00000602494 330 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 APOOP1-201ENST00000604695 592 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC103710.4-201ENST00000609301 899 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC245297.2-201ENST00000610119 565 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA1P55317 AL136981.2-201ENST00000617319 734 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC009269.6-201ENST00000621778 588 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AL691447.3-201ENST00000635020 330 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC131280.1-202ENST00000624067 4211 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 KPNA2P1-201ENST00000458289 1591 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
FOXA1P55317 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
FOXA1P55317 SNORA16.1-201ENST00000364597 132 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 RNU6-744P-201ENST00000365557 107 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 RNU1-39P-201ENST00000383897 165 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 RNU6-1316P-201ENST00000384242 108 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 Y_RNA.465-201ENST00000384293 102 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA1P55317 AC009414.1-201ENST00000427200 443 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA1P55317 RPS25P9-201ENST00000435591 252 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXA1P55317 UBE2FP3-201ENST00000436366 524 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA1P55317 HMGB3P12-201ENST00000438745 556 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA1P55317 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA1P55317 DDX3P2-201ENST00000446138 111 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 EXOSC3P1-201ENST00000448649 500 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AL139109.1-201ENST00000455491 297 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA1P55317 ATG12P2-201ENST00000456830 416 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 FCF1P6-201ENST00000456841 595 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AC104563.1-201ENST00000476147 376 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA1P55317 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXA1P55317 AC116353.3-201ENST00000511215 249 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AC024589.1-201ENST00000512207 263 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXA1P55317 RNU6-237P-201ENST00000515985 71 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA1P55317 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA1P55317 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
FOXA1P55317 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.79□□□□□ -2.12
FOXA1P55317 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
FOXA1P55317 ANP32BP3-201ENST00000559213 706 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXA1P55317 AC098826.3-201ENST00000603823 466 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
FOXA1P55317 AC009090.3-201ENST00000616553 565 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXA1P55317 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.79□□□□□ -2.12
FOXA1P55317 MIR4275-201ENST00000636486 87 ntBASIC1.79□□□□□ -2.12
FOXA1P55317 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
FOXA1P55317 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
FOXA1P55317 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA1P55317 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.79□□□□□ -2.12
FOXA1P55317 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.78□□□□□ -2.12
FOXA1P55317 AC092447.10-201ENST00000620607 1652 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.78□□□□□ -2.12
FOXA1P55317 DDX43P2-201ENST00000604753 1354 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 MTND4P9-201ENST00000507819 1346 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
FOXA1P55317 RNU6-777P-201ENST00000364265 104 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 SNORA23-201ENST00000365128 182 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
FOXA1P55317 MIR620-201ENST00000385232 95 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 U3.40-201ENST00000408706 208 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 USP9YP33-201ENST00000412220 421 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.78□□□□□ -2.12
FOXA1P55317 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.78□□□□□ -2.12
FOXA1P55317 MTCYBP38-201ENST00000417160 1123 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 TOMM20P4-201ENST00000427861 435 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 USP9YP35-201ENST00000435696 412 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 COX7BP2-201ENST00000437976 242 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 BNIP3P2-201ENST00000441221 577 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC087588.1-201ENST00000462203 316 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC108729.1-201ENST00000487812 947 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC022493.1-201ENST00000492984 337 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 RPS29P11-201ENST00000496507 171 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 RPL38P4-201ENST00000502376 214 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 RNA5SP291-201ENST00000517222 105 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.78□□□□□ -2.12
FOXA1P55317 TRAV28-201ENST00000557548 323 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.78□□□□□ -2.12
FOXA1P55317 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.78□□□□□ -2.12
FOXA1P55317 AC009712.1-201ENST00000564938 316 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.78□□□□□ -2.12
FOXA1P55317 AC005498.1-201ENST00000592125 465 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AL355877.2-201ENST00000603670 358 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC006386.1-201ENST00000619436 415 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 AC009268.2-201ENST00000621925 457 ntBASIC1.78□□□□□ -2.12
FOXA1P55317 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC1.78□□□□□ -2.12
FOXA1P55317 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms