Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 snoU13.28-201ENST00000459235 104 ntBASIC0.86□□□□□ -2.27
HMGA1P17096 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC0.86□□□□□ -2.27
HMGA1P17096 AC016065.2-201ENST00000514530 444 ntBASIC0.86□□□□□ -2.27
HMGA1P17096 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.86□□□□□ -2.27
HMGA1P17096 AC233266.2-201ENST00000567067 528 ntBASIC0.86□□□□□ -2.27
HMGA1P17096 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.86□□□□□ -2.27
HMGA1P17096 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC0.86□□□□□ -2.27
HMGA1P17096 AL355877.2-201ENST00000603670 358 ntBASIC0.86□□□□□ -2.27
HMGA1P17096 AL009028.1-201ENST00000604895 802 ntBASIC0.86□□□□□ -2.27
HMGA1P17096 AC090525.3-201ENST00000605601 189 ntBASIC0.86□□□□□ -2.27
HMGA1P17096 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
HMGA1P17096 SNORA22-201ENST00000383907 134 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 SNORA22C-201ENST00000384614 134 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 AC244636.1-201ENST00000421152 228 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.85□□□□□ -2.27
HMGA1P17096 AC004941.2-201ENST00000427009 228 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.85□□□□□ -2.27
HMGA1P17096 SUMO2P2-201ENST00000456482 255 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 RNA5SP436-201ENST00000516020 115 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC0.85□□□□□ -2.27
HMGA1P17096 DEFB108E-201ENST00000524692 240 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.85□□□□□ -2.27
HMGA1P17096 AC118273.2-201ENST00000532092 465 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.85□□□□□ -2.27
HMGA1P17096 PSMA3P-201ENST00000555485 635 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 AC108706.1-201ENST00000611053 297 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 AL773524.1-201ENST00000614065 229 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.85□□□□□ -2.27
HMGA1P17096 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
HMGA1P17096 RNU6-939P-201ENST00000384634 107 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 RN7SKP158-201ENST00000410453 326 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 UBE2FP1-201ENST00000416536 447 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 MED6P1-201ENST00000439659 713 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.84□□□□□ -2.27
HMGA1P17096 AC018437.1-201ENST00000492214 406 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 OR9N1P-202ENST00000494289 481 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
HMGA1P17096 RNU6-351P-201ENST00000516097 100 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC0.84□□□□□ -2.27
HMGA1P17096 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.84□□□□□ -2.27
HMGA1P17096 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.84□□□□□ -2.27
HMGA1P17096 AC021749.1-201ENST00000604322 607 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 AC016925.2-201ENST00000605108 242 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 MIR7973-1-201ENST00000614683 76 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 MIR6515-201ENST00000619843 57 ntBASIC0.84□□□□□ -2.27
HMGA1P17096 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.84□□□□□ -2.27
HMGA1P17096 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
HMGA1P17096 SLC10A5P1-201ENST00000379063 1306 ntBASIC0.84□□□□□ -2.28
HMGA1P17096 RNU6-374P-201ENST00000364146 108 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 RNA5SP125-201ENST00000364843 120 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 Y_RNA.493-201ENST00000384422 102 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 RN7SKP61-201ENST00000410642 295 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 SFR1P2-201ENST00000421841 730 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 AC093106.2-201ENST00000428212 385 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.83□□□□□ -2.28
HMGA1P17096 PTENP1-201ENST00000447117 1215 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.83□□□□□ -2.28
HMGA1P17096 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
HMGA1P17096 AC133963.2-201ENST00000513686 578 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.83□□□□□ -2.28
HMGA1P17096 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.83□□□□□ -2.28
HMGA1P17096 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC0.83□□□□□ -2.28
HMGA1P17096 MIR3198-2-201ENST00000577868 80 ntBASIC0.83□□□□□ -2.28
HMGA1P17096 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.83□□□□□ -2.28
HMGA1P17096 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC0.83□□□□□ -2.28
HMGA1P17096 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.83□□□□□ -2.28
HMGA1P17096 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
HMGA1P17096 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
HMGA1P17096 AL049737.1-201ENST00000413920 1403 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
HMGA1P17096 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
HMGA1P17096 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 Z86062.1-201ENST00000406773 777 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.82□□□□□ -2.28
HMGA1P17096 AC017099.1-201ENST00000448261 1028 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 AC117503.1-201ENST00000472241 394 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 PRELID3BP4-201ENST00000515476 571 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.82□□□□□ -2.28
HMGA1P17096 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC0.82□□□□□ -2.28
HMGA1P17096 MIR5571-201ENST00000577998 113 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC0.82□□□□□ -2.28
HMGA1P17096 AC012443.1-201ENST00000605605 231 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 AP002791.1-201ENST00000623291 381 ntBASIC0.82□□□□□ -2.28
HMGA1P17096 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC0.82□□□□□ -2.28
HMGA1P17096 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
HMGA1P17096 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.81□□□□□ -2.28
HMGA1P17096 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
HMGA1P17096 SNORD114-2-201ENST00000363953 78 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC0.81□□□□□ -2.28
HMGA1P17096 Y_RNA.540-201ENST00000384638 111 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 RNU6-244P-201ENST00000391028 104 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC0.81□□□□□ -2.28
HMGA1P17096 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.81□□□□□ -2.28
HMGA1P17096 FGF7P5-201ENST00000441829 291 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.81□□□□□ -2.28
HMGA1P17096 MTCYBP3-201ENST00000445588 1137 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC0.81□□□□□ -2.28
HMGA1P17096 OR6C72P-201ENST00000451403 892 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms