Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
HLA-DQA1P01909 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AL445523.1-201ENST00000451184 1362 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RNU6-1284P-201ENST00000363701 100 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RNY3P13-201ENST00000365542 102 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 SET-203ENST00000372688 801 ntTSL 2 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RPA3-203ENST00000401447 414 ntTSL 3 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 NDUFS5P1-201ENST00000405668 289 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC080125.1-201ENST00000414888 684 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RPL23AP39-201ENST00000415533 405 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 BPY2DP-201ENST00000422208 265 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RPL23AP83-201ENST00000434984 473 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RPS15AP5-201ENST00000436276 388 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 DPPA3P1-201ENST00000448050 469 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC108059.3-201ENST00000456388 214 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC133134.1-201ENST00000466800 359 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 LINC00888-204ENST00000487386 421 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RPS27AP10-201ENST00000496103 208 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC105252.1-201ENST00000503089 286 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 SNORA31.3-201ENST00000516029 96 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 RNU6-678P-201ENST00000516832 109 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AP003467.2-201ENST00000520175 319 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC022634.1-201ENST00000520765 532 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC107934.1-201ENST00000522215 217 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AL359212.1-201ENST00000556608 614 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC090616.3-201ENST00000582184 217 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC005498.1-201ENST00000592125 465 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AL451007.1-201ENST00000595491 289 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 KC877982.1-201ENST00000602313 470 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC024153.1-201ENST00000603103 365 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AP001981.2-201ENST00000603241 418 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AP000860.1-201ENST00000605250 559 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AC007619.2-201ENST00000605743 379 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 MIR6895-201ENST00000613497 78 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 ZNF519P1-201ENST00000449011 1626 ntBASIC1.9□□□□□ -2.11
HLA-DQA1P01909 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.9□□□□□ -2.11
HLA-DQA1P01909 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AL139276.1-201ENST00000311910 1001 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RNU6-500P-201ENST00000362349 107 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RNU6-778P-201ENST00000363269 103 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 MTCYBP36-201ENST00000404146 440 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RPS4XP7-201ENST00000406274 780 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 MORF4L1P6-201ENST00000418771 268 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RPS27AP14-201ENST00000422868 454 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AL358075.3-201ENST00000426289 226 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 MTCYBP39-201ENST00000437562 491 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AL512286.1-201ENST00000439244 400 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 MTND5P2-201ENST00000442927 1142 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC118469.1-201ENST00000442943 488 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AL031659.1-201ENST00000447075 539 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC139453.3-201ENST00000493276 369 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC113155.1-201ENST00000511141 769 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AF131216.2-201ENST00000512316 564 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 SNORA3.4-201ENST00000515969 96 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 SCARNA17.1-201ENST00000516211 143 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 SCARNA17.2-201ENST00000516334 143 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RNU1-103P-201ENST00000516502 125 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RNA5SP82-201ENST00000516707 92 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RNU6-201P-201ENST00000517100 61 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 RNU1-104P-201ENST00000517280 175 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 CKS1BP7-201ENST00000522230 235 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 ZNF321P-202ENST00000550843 495 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 ARL2BPP2-201ENST00000550907 489 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC091489.2-201ENST00000566263 604 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC012435.1-202ENST00000568772 240 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC103810.1-201ENST00000579873 453 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 MIR3118-1-201ENST00000581787 76 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 OR1M4P-201ENST00000589199 287 ntBASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC1.89□□□□□ -2.11
HLA-DQA1P01909 AC093424.1-201ENST00000604999 338 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms