Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RNU1-72P-201ENST00000362976 153 ntBASIC1.17□□□□□ -2.22
TNFP01375 AC010385.1-201ENST00000412374 256 ntBASIC1.17□□□□□ -2.22
TNFP01375 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.17□□□□□ -2.22
TNFP01375 AL121601.2-201ENST00000438019 707 ntBASIC1.17□□□□□ -2.22
TNFP01375 AC118469.1-201ENST00000442943 488 ntBASIC1.17□□□□□ -2.22
TNFP01375 AC114786.4-201ENST00000508771 728 ntBASIC1.17□□□□□ -2.22
TNFP01375 TPT1P8-201ENST00000510120 555 ntBASIC1.17□□□□□ -2.22
TNFP01375 AC114797.1-201ENST00000514003 728 ntBASIC1.17□□□□□ -2.22
TNFP01375 RNA5SP102-201ENST00000516865 106 ntBASIC1.17□□□□□ -2.22
TNFP01375 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.17□□□□□ -2.22
TNFP01375 AC068338.1-201ENST00000565567 176 ntBASIC1.17□□□□□ -2.22
TNFP01375 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.17□□□□□ -2.22
TNFP01375 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC1.17□□□□□ -2.22
TNFP01375 AC097468.3-201ENST00000607956 456 ntBASIC1.17□□□□□ -2.22
TNFP01375 MIR6504-201ENST00000613520 61 ntBASIC1.17□□□□□ -2.22
TNFP01375 U4atac.1-201ENST00000618345 95 ntBASIC1.17□□□□□ -2.22
TNFP01375 AC091304.6-201ENST00000619761 202 ntBASIC1.17□□□□□ -2.22
TNFP01375 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.17□□□□□ -2.22
TNFP01375 U3.13-201ENST00000364804 214 ntBASIC1.16□□□□□ -2.22
TNFP01375 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
TNFP01375 AL033519.2-201ENST00000403958 392 ntBASIC1.16□□□□□ -2.22
TNFP01375 RNA5SP450-201ENST00000411206 102 ntBASIC1.16□□□□□ -2.22
TNFP01375 FO393419.3-201ENST00000428741 282 ntBASIC1.16□□□□□ -2.22
TNFP01375 AL365400.1-201ENST00000431854 640 ntBASIC1.16□□□□□ -2.22
TNFP01375 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.16□□□□□ -2.22
TNFP01375 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC1.16□□□□□ -2.22
TNFP01375 RPL12P25-201ENST00000455592 494 ntBASIC1.16□□□□□ -2.22
TNFP01375 AC005410.1-202ENST00000460347 485 ntBASIC1.16□□□□□ -2.22
TNFP01375 COX6CP14-201ENST00000469580 174 ntBASIC1.16□□□□□ -2.22
TNFP01375 AC025459.1-201ENST00000504072 156 ntBASIC1.16□□□□□ -2.22
TNFP01375 AC117525.1-201ENST00000515228 503 ntBASIC1.16□□□□□ -2.22
TNFP01375 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.16□□□□□ -2.22
TNFP01375 AC025857.1-201ENST00000525252 377 ntBASIC1.16□□□□□ -2.22
TNFP01375 HMGN2P15-201ENST00000585707 270 ntBASIC1.16□□□□□ -2.22
TNFP01375 AL078605.1-201ENST00000603529 500 ntBASIC1.16□□□□□ -2.22
TNFP01375 AC080078.3-201ENST00000605407 463 ntBASIC1.16□□□□□ -2.22
TNFP01375 AC008121.3-201ENST00000618726 433 ntBASIC1.16□□□□□ -2.22
TNFP01375 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.16□□□□□ -2.22
TNFP01375 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.15□□□□□ -2.22
TNFP01375 RNU1-22P-201ENST00000363334 158 ntBASIC1.15□□□□□ -2.23
TNFP01375 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.15□□□□□ -2.23
TNFP01375 RNU6-441P-201ENST00000384545 106 ntBASIC1.15□□□□□ -2.23
TNFP01375 HMGN2P39-201ENST00000398005 273 ntBASIC1.15□□□□□ -2.23
TNFP01375 HMGB1P49-201ENST00000418882 569 ntBASIC1.15□□□□□ -2.23
TNFP01375 SDAD1P3-201ENST00000427380 333 ntBASIC1.15□□□□□ -2.23
TNFP01375 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
TNFP01375 MICF-203ENST00000432679 129 ntBASIC1.15□□□□□ -2.23
TNFP01375 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
TNFP01375 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC1.15□□□□□ -2.23
TNFP01375 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.15□□□□□ -2.23
TNFP01375 AC080013.2-201ENST00000460866 323 ntBASIC1.15□□□□□ -2.23
TNFP01375 AC098862.1-201ENST00000504991 413 ntBASIC1.15□□□□□ -2.23
TNFP01375 AC093752.1-206ENST00000511823 336 ntBASIC1.15□□□□□ -2.23
TNFP01375 RNU6-1282P-201ENST00000516735 96 ntBASIC1.15□□□□□ -2.23
TNFP01375 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.15□□□□□ -2.23
TNFP01375 MIR4295-201ENST00000585286 85 ntBASIC1.15□□□□□ -2.23
TNFP01375 AC069294.1-201ENST00000608397 350 ntBASIC1.15□□□□□ -2.23
TNFP01375 AC011330.2-201ENST00000621680 635 ntBASIC1.15□□□□□ -2.23
TNFP01375 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
TNFP01375 AL356473.1-201ENST00000406203 1408 ntBASIC1.15□□□□□ -2.23
TNFP01375 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.14□□□□□ -2.23
TNFP01375 RNU6-386P-201ENST00000362650 107 ntBASIC1.14□□□□□ -2.23
TNFP01375 TAF9BP2-201ENST00000400856 499 ntBASIC1.14□□□□□ -2.23
TNFP01375 USP9YP6-201ENST00000413550 854 ntBASIC1.14□□□□□ -2.23
TNFP01375 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.14□□□□□ -2.23
TNFP01375 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.14□□□□□ -2.23
TNFP01375 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 MTND6P13-201ENST00000443510 523 ntBASIC1.14□□□□□ -2.23
TNFP01375 RAC1P7-201ENST00000445367 377 ntBASIC1.14□□□□□ -2.23
TNFP01375 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 HSPE1P24-201ENST00000450782 238 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC104073.1-201ENST00000451988 151 ntBASIC1.14□□□□□ -2.23
TNFP01375 USP9YP34-201ENST00000453983 808 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC087343.1-201ENST00000477341 475 ntBASIC1.14□□□□□ -2.23
TNFP01375 RPS3AP22-201ENST00000488297 769 ntBASIC1.14□□□□□ -2.23
TNFP01375 MTCYBP35-201ENST00000503630 1137 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC093801.2-201ENST00000503966 1050 ntBASIC1.14□□□□□ -2.23
TNFP01375 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 LTV1P1-201ENST00000510683 1237 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 AF131216.2-201ENST00000512316 564 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.14□□□□□ -2.23
TNFP01375 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.14□□□□□ -2.23
TNFP01375 BNIP3P25-201ENST00000596023 559 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC008121.1-201ENST00000603244 268 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC018926.3-201ENST00000618841 406 ntBASIC1.14□□□□□ -2.23
TNFP01375 AC090772.4-201ENST00000623599 362 ntBASIC1.14□□□□□ -2.23
TNFP01375 MTND5P35-201ENST00000557537 1720 ntBASIC1.14□□□□□ -2.23
TNFP01375 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.13□□□□□ -2.23
TNFP01375 AL356131.1-201ENST00000405826 414 ntBASIC1.13□□□□□ -2.23
TNFP01375 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.13□□□□□ -2.23
TNFP01375 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.13□□□□□ -2.23
TNFP01375 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.13□□□□□ -2.23
TNFP01375 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
TNFP01375 TAAR7P-201ENST00000436141 242 ntBASIC1.13□□□□□ -2.23
TNFP01375 AP000949.1-201ENST00000438328 629 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms