Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 USP9YP32-201ENST00000452432 430 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.06□□□□□ -1.92
LMX1BO60663 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.06□□□□□ -1.92
LMX1BO60663 ST13P14-201ENST00000474095 734 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.06□□□□□ -1.92
LMX1BO60663 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.06□□□□□ -1.92
LMX1BO60663 TTC39CP1-201ENST00000512513 755 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.06□□□□□ -1.92
LMX1BO60663 RN7SKP13-201ENST00000515933 244 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 RNU2-10P-201ENST00000516375 211 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 RNU6-579P-201ENST00000516879 102 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 RN7SKP57-201ENST00000517248 293 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AC105029.1-201ENST00000520250 669 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.06□□□□□ -1.92
LMX1BO60663 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.06□□□□□ -1.92
LMX1BO60663 AP003385.6-201ENST00000531603 374 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AC243972.3-201ENST00000539655 198 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.06□□□□□ -1.92
LMX1BO60663 AC011602.1-201ENST00000546484 331 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AC011611.1-201ENST00000552179 197 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.06□□□□□ -1.92
LMX1BO60663 NCAPGP2-201ENST00000557911 754 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 TGIF1P1-201ENST00000558095 802 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.06□□□□□ -1.92
LMX1BO60663 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.06□□□□□ -1.92
LMX1BO60663 AC013553.2-201ENST00000604244 589 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.06□□□□□ -1.92
LMX1BO60663 AC105429.2-201ENST00000610567 517 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 MIR7851-201ENST00000610611 160 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 AC012531.5-201ENST00000611375 151 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.06□□□□□ -1.92
LMX1BO60663 AC011155.2-201ENST00000623202 216 ntBASIC3.06□□□□□ -1.92
LMX1BO60663 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
LMX1BO60663 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
LMX1BO60663 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LMX1BO60663 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 AC090337.1-201ENST00000579651 2074 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LMX1BO60663 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 AL353746.1-201ENST00000566293 6881 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LMX1BO60663 SNORD9-201ENST00000362566 104 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU6-552P-201ENST00000362869 119 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU6-960P-201ENST00000364056 120 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 Y_RNA.231-201ENST00000364358 102 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 U3.12-201ENST00000364498 214 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 Y_RNA.394-201ENST00000383942 103 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU6-637P-201ENST00000384050 107 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU6-1011P-201ENST00000384668 107 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 MIR124-3-201ENST00000384866 87 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 MIR153-1-201ENST00000384914 90 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LMX1BO60663 AL136372.1-201ENST00000403060 228 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RPS12P23-201ENST00000419579 400 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AC093106.2-201ENST00000428212 385 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 MTND1P18-201ENST00000448191 573 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AL162395.1-201ENST00000457882 422 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU7-180P-201ENST00000459240 63 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 SNORA59A-201ENST00000459326 152 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RN7SL807P-201ENST00000470923 297 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 RPS29P2-201ENST00000479278 136 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RPS15AP36-201ENST00000492022 382 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RPL7P23-201ENST00000493874 747 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.05□□□□□ -1.92
LMX1BO60663 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 RNU6-1095P-201ENST00000516148 108 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU2-27P-201ENST00000516185 142 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU7-51P-201ENST00000516560 62 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU7-30P-201ENST00000516835 62 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RN7SKP116-201ENST00000516902 319 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 RNU6-1314P-201ENST00000517139 104 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.05□□□□□ -1.92
LMX1BO60663 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.05□□□□□ -1.92
LMX1BO60663 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 PSMA3P-201ENST00000555485 635 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AL118558.2-201ENST00000556294 238 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.05□□□□□ -1.92
LMX1BO60663 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.05□□□□□ -1.92
LMX1BO60663 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.05□□□□□ -1.92
LMX1BO60663 AC067852.3-201ENST00000589177 561 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.05□□□□□ -1.92
LMX1BO60663 AC010680.4-201ENST00000605334 543 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AC016727.1-205ENST00000605437 569 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AC012443.1-201ENST00000605605 231 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AL050343.2-201ENST00000607338 280 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AL355365.1-201ENST00000616480 294 ntBASIC3.05□□□□□ -1.92
LMX1BO60663 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LMX1BO60663 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
LMX1BO60663 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.05□□□□□ -1.92
LMX1BO60663 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LMX1BO60663 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
LMX1BO60663 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LMX1BO60663 TAB3P1-202ENST00000452645 1634 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
LMX1BO60663 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms