Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 RNU4-34P-201ENST00000410431 124 ntBASIC9.25□□□□□ -0.93
SENP3Q9H4L4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 POC1B-211ENST00000549504 581 ntTSL 5 BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 RNU6-478P-201ENST00000363904 110 ntBASIC9.24□□□□□ -0.93
SENP3Q9H4L4 RNU6-1189P-201ENST00000383958 107 ntBASIC9.24□□□□□ -0.93
SENP3Q9H4L4 RPL30P4-201ENST00000429309 333 ntBASIC9.24□□□□□ -0.93
SENP3Q9H4L4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 RPS23P4-201ENST00000487908 423 ntBASIC9.24□□□□□ -0.93
SENP3Q9H4L4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 USP48-203ENST00000374732 3037 ntTSL 2 BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
SENP3Q9H4L4 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 RNA5SP477-201ENST00000362639 119 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 RNU1-19P-201ENST00000363306 165 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 UBBP2-201ENST00000376781 231 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 Y_RNA.410-201ENST00000383992 113 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 SCARNA18B-201ENST00000458806 135 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 HMGN2P9-201ENST00000476875 229 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 RN7SL165P-201ENST00000477476 291 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 MIR4701-201ENST00000583094 63 ntBASIC9.23□□□□□ -0.93
SENP3Q9H4L4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
SENP3Q9H4L4 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 AL136531.3-201ENST00000624378 3658 ntBASIC9.22□□□□□ -0.93
SENP3Q9H4L4 RNA5SP273-201ENST00000362484 113 ntBASIC9.22□□□□□ -0.93
SENP3Q9H4L4 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 H3F3BP1-201ENST00000440551 403 ntBASIC9.22□□□□□ -0.93
SENP3Q9H4L4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
SENP3Q9H4L4 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
SENP3Q9H4L4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 RNA5SP515-201ENST00000364570 118 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 SNORA51.4-201ENST00000364993 124 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 SNORD14D-201ENST00000384390 87 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 SNORA70E-201ENST00000384492 135 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC9.21□□□□□ -0.94
SENP3Q9H4L4 AL161932.1-201ENST00000437408 146 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 AC145146.1-201ENST00000496370 254 ntBASIC9.21□□□□□ -0.94
SENP3Q9H4L4 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC9.21□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms