Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CBWD4P-201ENST00000445695 655 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 RN7SL442P-201ENST00000473804 320 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 RBM43P1-201ENST00000476891 1081 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC004924.1-201ENST00000480160 781 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 Vault.3-201ENST00000516676 95 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 MTCO2P4-201ENST00000517968 247 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 HMGB1P14-201ENST00000557424 591 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC034105.3-201ENST00000565294 442 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC137800.2-201ENST00000574375 120 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC040904.1-201ENST00000590850 223 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC245014.2-201ENST00000603689 287 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC006023.1-201ENST00000603944 259 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC013553.2-201ENST00000604244 589 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC246785.4-201ENST00000605374 287 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC008962.1-201ENST00000605729 304 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AL138880.2-201ENST00000616214 239 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 OR4G2P-202ENST00000641004 1759 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 RNU6-741P-201ENST00000383889 107 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 RNU1-39P-201ENST00000383897 165 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 RPS3AP36-201ENST00000398190 775 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 C1DP2-201ENST00000418167 426 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 MTND2P24-201ENST00000453434 806 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC006483.1-201ENST00000487308 313 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 SNORA18.6-201ENST00000516792 115 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC104027.1-201ENST00000521887 300 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 MIR3611-201ENST00000584484 83 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 RPL12P50-201ENST00000603116 116 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC174048.1-201ENST00000603389 144 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC015871.2-201ENST00000603605 948 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AP000860.1-201ENST00000605250 559 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 MIR6076-201ENST00000617521 113 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC006338.1-201ENST00000618453 749 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 FAM35CP-201ENST00000554755 2470 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 CR848007.1-201ENST00000442354 1699 ntBASIC2.95□□□□□ -1.94
CCDC3Q9BQI4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 TPTE2P4-201ENST00000258589 1605 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 SNORD56.3-201ENST00000363507 71 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 RNU6-1077P-201ENST00000410506 102 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 RPS15AP12-201ENST00000419498 388 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 TMEM167AP1-201ENST00000423409 219 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC092047.1-201ENST00000424997 240 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AL139132.1-201ENST00000431587 344 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 MTCO2P7-201ENST00000446518 666 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 RPL21P8-201ENST00000465083 535 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 RPS29P26-201ENST00000477483 171 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 RN7SL432P-201ENST00000484057 298 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AL049874.1-201ENST00000489560 388 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 MTCO3P28-201ENST00000513351 515 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 SCARNA20.6-201ENST00000517251 106 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC087883.1-201ENST00000551882 391 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC027807.1-201ENST00000559921 996 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 MIR3167-201ENST00000579623 85 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC079089.3-201ENST00000603094 673 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AL133393.1-201ENST00000603277 287 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AP002360.4-201ENST00000606980 481 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC004832.5-201ENST00000608677 401 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC005332.10-201ENST00000612725 619 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC099842.1-201ENST00000619919 596 ntBASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC3Q9BQI4 AC007785.2-201ENST00000598627 1916 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 OR5J1P-201ENST00000313544 939 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RNY4P34-201ENST00000364779 95 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RNU6-169P-201ENST00000365336 107 ntBASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
CCDC3Q9BQI4 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms