Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RBBP4P6-201ENST00000508098 202 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 TTC39CP1-201ENST00000512513 755 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 RNU6-1178P-201ENST00000516674 107 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 SNORA70.24-201ENST00000517233 118 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.09□□□□□ -1.75
NUP88Q99567 ATP5F1P5-201ENST00000526403 760 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.09□□□□□ -1.75
NUP88Q99567 SYF2P1-201ENST00000550658 413 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC4.09□□□□□ -1.75
NUP88Q99567 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.09□□□□□ -1.75
NUP88Q99567 KLKP1-201ENST00000595979 403 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 AC174048.1-201ENST00000603389 144 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 AC008945.2-201ENST00000606056 604 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 AC090132.2-201ENST00000615881 347 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 FER-210ENST00000628534 558 ntTSL 5 BASIC4.09□□□□□ -1.75
NUP88Q99567 MTND5P42-201ENST00000637720 498 ntBASIC4.09□□□□□ -1.75
NUP88Q99567 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
NUP88Q99567 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.09□□□□□ -1.76
NUP88Q99567 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
NUP88Q99567 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
NUP88Q99567 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NUP88Q99567 RNU6-116P-201ENST00000384042 109 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NUP88Q99567 RNU6-1197P-201ENST00000391183 107 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 RPL30P2-201ENST00000414021 291 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.08□□□□□ -1.76
NUP88Q99567 AL158156.1-201ENST00000422509 473 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 AC002075.2-201ENST00000425207 252 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.08□□□□□ -1.76
NUP88Q99567 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.08□□□□□ -1.76
NUP88Q99567 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.08□□□□□ -1.76
NUP88Q99567 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.08□□□□□ -1.76
NUP88Q99567 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NUP88Q99567 RPS20P22-201ENST00000473700 357 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.08□□□□□ -1.76
NUP88Q99567 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 RNU6-143P-201ENST00000516942 93 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.08□□□□□ -1.76
NUP88Q99567 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
NUP88Q99567 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.08□□□□□ -1.76
NUP88Q99567 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 MIR4703-201ENST00000577728 79 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.08□□□□□ -1.76
NUP88Q99567 AC013553.2-201ENST00000604244 589 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 AC022893.3-201ENST00000607665 437 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 MIR7851-201ENST00000610611 160 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NUP88Q99567 AC034102.8-201ENST00000615146 484 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 AC011155.2-201ENST00000623202 216 ntBASIC4.08□□□□□ -1.76
NUP88Q99567 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.08□□□□□ -1.76
NUP88Q99567 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
NUP88Q99567 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
NUP88Q99567 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
NUP88Q99567 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
NUP88Q99567 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
NUP88Q99567 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NUP88Q99567 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
NUP88Q99567 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
NUP88Q99567 RNU6-512P-201ENST00000364438 103 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 RNU6-534P-201ENST00000364877 106 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
NUP88Q99567 RNU6-741P-201ENST00000383889 107 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 CISD1P1-201ENST00000393907 327 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 UBE2V1P2-201ENST00000397758 440 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 RPS12P24-201ENST00000412619 387 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 AL109913.1-201ENST00000421173 514 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 TMEM167AP1-201ENST00000423409 219 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 RPS29P31-201ENST00000446147 164 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.07□□□□□ -1.76
NUP88Q99567 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.07□□□□□ -1.76
NUP88Q99567 RPL21P8-201ENST00000465083 535 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 AC084357.1-201ENST00000473404 255 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 KC877373.1-201ENST00000479066 408 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 AP001086.1-201ENST00000494882 321 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 AC092436.1-201ENST00000506450 503 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 RNU1-61P-201ENST00000516107 151 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 RNA5SP290-201ENST00000517133 127 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 IGKV2-26-201ENST00000518305 343 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
NUP88Q99567 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.07□□□□□ -1.76
NUP88Q99567 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.07□□□□□ -1.76
NUP88Q99567 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 AC107294.1-201ENST00000609524 467 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 uc_338.11-201ENST00000619132 160 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.07□□□□□ -1.76
NUP88Q99567 AC024940.5-201ENST00000622889 474 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 AP003355.3-201ENST00000623465 114 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 MIR3662-201ENST00000637030 95 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 417.3 ms