Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC073901.1-201ENST00000462471 408 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 AC126182.1-201ENST00000478134 357 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 RPL23AP70-201ENST00000483361 460 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 AC105252.1-201ENST00000503089 286 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.57□□□□□ -2
VPS35Q96QK1 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS35Q96QK1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS35Q96QK1 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.57□□□□□ -2
VPS35Q96QK1 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.57□□□□□ -2
VPS35Q96QK1 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.57□□□□□ -2
VPS35Q96QK1 AC090888.2-201ENST00000559765 1144 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 MIR4307-201ENST00000582802 84 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 OR1M4P-201ENST00000589199 287 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 AC140725.3-201ENST00000616193 880 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.57□□□□□ -2
VPS35Q96QK1 SCARNA15.3-201ENST00000626315 122 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 SCARNA4.1-201ENST00000628597 123 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
VPS35Q96QK1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.57□□□□□ -2
VPS35Q96QK1 MTND5P29-201ENST00000458676 1807 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 SNORD62.1-201ENST00000362541 86 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 SET-203ENST00000372688 801 ntTSL 2 BASIC2.56□□□□□ -2
VPS35Q96QK1 MIR196B-201ENST00000384852 84 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 RNU6-278P-201ENST00000390945 109 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AL139397.2-201ENST00000404529 772 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AL513475.1-201ENST00000406602 315 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC078974.1-201ENST00000411597 223 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.56□□□□□ -2
VPS35Q96QK1 CR769767.1-201ENST00000436337 346 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.56□□□□□ -2
VPS35Q96QK1 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.56□□□□□ -2
VPS35Q96QK1 CECR9-201ENST00000453421 199 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.56□□□□□ -2
VPS35Q96QK1 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
VPS35Q96QK1 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.56□□□□□ -2
VPS35Q96QK1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 RPPH1-2P-201ENST00000516688 293 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 RNA5SP471-201ENST00000516971 106 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.56□□□□□ -2
VPS35Q96QK1 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.56□□□□□ -2
VPS35Q96QK1 AC103810.1-201ENST00000579873 453 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC090616.3-201ENST00000582184 217 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AP001004.1-201ENST00000582468 324 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AP000811.1-201ENST00000603803 651 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC098826.3-201ENST00000603823 466 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC112187.2-201ENST00000604345 283 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AL161798.1-201ENST00000604630 131 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC018714.1-201ENST00000605028 208 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 OR10AB1P-201ENST00000609613 938 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC021755.4-201ENST00000616620 456 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 AC007490.1-201ENST00000624321 703 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.56□□□□□ -2
VPS35Q96QK1 AC080100.1-201ENST00000624239 5356 ntBASIC2.56□□□□□ -2
VPS35Q96QK1 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS35Q96QK1 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS35Q96QK1 RNY4P24-201ENST00000362735 96 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 Y_RNA.111-201ENST00000363248 100 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 RNU6-1284P-201ENST00000363701 100 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 RNU6-660P-201ENST00000364566 109 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 U8.14-201ENST00000390843 143 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 AL356057.2-201ENST00000403318 432 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC023141.4-201ENST00000412031 328 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 USP9YP20-201ENST00000419224 558 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 RPS15AP7-201ENST00000439294 405 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 CACYBPP2-201ENST00000453625 678 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 RPL37P6-201ENST00000460682 294 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 MTND2P14-201ENST00000482139 351 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 RPS27AP10-201ENST00000496103 208 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 RN7SKP40-201ENST00000517211 242 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.55□□□□□ -2
VPS35Q96QK1 MRPS36P3-201ENST00000519284 130 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.55□□□□□ -2
VPS35Q96QK1 AP001372.4-201ENST00000524889 472 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.55□□□□□ -2
VPS35Q96QK1 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.55□□□□□ -2
VPS35Q96QK1 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.55□□□□□ -2
VPS35Q96QK1 AL356432.3-201ENST00000568952 465 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 MIR5092-201ENST00000583139 88 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.55□□□□□ -2
VPS35Q96QK1 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC006023.1-201ENST00000603944 259 ntBASIC2.55□□□□□ -2
VPS35Q96QK1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.55□□□□□ -2
VPS35Q96QK1 AC107214.2-201ENST00000608204 634 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms