Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC068724.3-201ENST00000625906 87 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AC119674.1-207ENST00000641355 633 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 AL158163.1-201ENST00000603915 1649 ntBASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLIP3Q96DZ5 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
CLIP3Q96DZ5 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.15□□□□□ -1.74
CLIP3Q96DZ5 AC018555.1-201ENST00000567548 1980 ntBASIC4.15□□□□□ -1.74
CLIP3Q96DZ5 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNU6-552P-201ENST00000362869 119 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 Y_RNA.148-201ENST00000363557 117 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP175-201ENST00000364275 119 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNU1-132P-201ENST00000364300 164 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNU4-66P-201ENST00000365199 138 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 Y_RNA.530-201ENST00000384587 101 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 MIR1193-201ENST00000408109 78 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RPL17P36-201ENST00000420302 549 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RPL23AP52-201ENST00000439311 478 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 NUTF2P7-201ENST00000453086 375 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 ANP32BP2-201ENST00000454525 545 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNU7-180P-201ENST00000459240 63 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 SNORA31.3-201ENST00000516029 96 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNU6-927P-201ENST00000516199 100 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNU6-264P-201ENST00000517134 104 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 MIR2116-201ENST00000517221 80 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AC004024.1-201ENST00000549244 247 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 SYF2P1-201ENST00000550658 413 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AC067852.3-201ENST00000589177 561 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 BNIP3P25-201ENST00000596023 559 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AL670379.10-201ENST00000604330 253 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 AL670379.9-201ENST00000605428 253 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 MIR6891-201ENST00000618788 93 ntBASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CLIP3Q96DZ5 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP479-201ENST00000364858 117 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RNU6-946P-201ENST00000383878 107 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 MT-TG-201ENST00000387429 68 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RNU6-1106P-201ENST00000390845 107 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RNU6-370P-201ENST00000411008 104 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AL118520.1-201ENST00000450770 291 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 ELOCP24-201ENST00000456370 334 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RPS29P15-201ENST00000458329 171 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RPS23P3-201ENST00000470993 430 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RPS20P22-201ENST00000473700 357 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RPL23AP11-201ENST00000475260 469 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 RPS26P15-201ENST00000488067 348 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC007224.1-201ENST00000564410 144 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 MIR4680-201ENST00000580906 66 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 MIR4775-201ENST00000581168 75 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC174048.1-201ENST00000603389 144 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AL160290.3-201ENST00000604869 165 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC007619.2-201ENST00000605743 379 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 HMGB1P50-201ENST00000605814 607 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 AC090740.1-201ENST00000623193 2262 ntBASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.14□□□□□ -1.75
CLIP3Q96DZ5 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AL353746.1-201ENST00000566293 6881 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RNU6-179P-201ENST00000363350 107 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RNU6-1188P-201ENST00000363795 107 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 MIR921-201ENST00000401133 56 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 PPIAP31-201ENST00000405422 495 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms