Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.62□□□□□ -1.67
SF3A1Q15459 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SF3A1Q15459 Y_RNA.303-201ENST00000364998 94 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 SNORA32.2-201ENST00000384049 122 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 POLHP1-201ENST00000411806 470 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 HMGN2P30-201ENST00000423237 256 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 RANP8-201ENST00000444720 713 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 HMGB3P22-202ENST00000451823 572 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.62□□□□□ -1.67
SF3A1Q15459 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 DYNLL1P5-201ENST00000467158 270 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC105137.1-201ENST00000484355 562 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 RN7SL604P-201ENST00000492589 296 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC022493.1-201ENST00000492984 337 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.62□□□□□ -1.67
SF3A1Q15459 AC008716.1-201ENST00000511084 513 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 TBCAP3-201ENST00000512475 312 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC026402.1-201ENST00000513642 170 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 Y_RNA.665-201ENST00000516177 98 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 RPL7P20-201ENST00000520308 745 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC023050.3-201ENST00000541142 333 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.62□□□□□ -1.67
SF3A1Q15459 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.62□□□□□ -1.67
SF3A1Q15459 MIR4644-201ENST00000579929 84 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 RN7SL600P-201ENST00000581811 299 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC018638.8-201ENST00000588755 281 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC073539.2-201ENST00000597113 165 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 IPO5P1-202ENST00000600039 287 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 MIR8059-201ENST00000620427 81 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC022418.1-201ENST00000624118 445 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 U6.99-201ENST00000637524 83 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 AC118273.1-201ENST00000525324 3006 ntBASIC4.62□□□□□ -1.67
SF3A1Q15459 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SF3A1Q15459 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SF3A1Q15459 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SF3A1Q15459 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.62□□□□□ -1.67
SF3A1Q15459 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SF3A1Q15459 AL136164.4-201ENST00000625013 2135 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 SNORA72.1-201ENST00000363485 129 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 RN7SKP280-201ENST00000364196 304 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 RNU6-371P-201ENST00000364283 108 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 SNORD6-201ENST00000365444 73 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 RNA5SP38-201ENST00000410750 119 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 RN7SKP263-201ENST00000411194 309 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 RPL21P111-201ENST00000418453 477 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.61□□□□□ -1.67
SF3A1Q15459 RPL23AP82-202ENST00000427528 469 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.61□□□□□ -1.67
SF3A1Q15459 AC083904.1-201ENST00000487828 231 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AC114786.4-201ENST00000508771 728 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 MTND3P25-201ENST00000509243 135 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 HIGD1AP13-201ENST00000509878 289 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AC026726.1-201ENST00000512859 601 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SF3A1Q15459 SNORA20.3-201ENST00000516880 132 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 SNORA31.19-201ENST00000517079 126 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.61□□□□□ -1.67
SF3A1Q15459 BTF3P12-201ENST00000519620 469 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AP000867.2-201ENST00000532468 320 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 MIR3160-1-201ENST00000577972 85 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AC011712.1-201ENST00000588959 234 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 VN1R80P-201ENST00000597126 338 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 ARF4P1-201ENST00000605447 541 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AC103710.3-201ENST00000608157 948 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AL445567.2-201ENST00000618935 498 ntBASIC4.61□□□□□ -1.67
SF3A1Q15459 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.61□□□□□ -1.67
SF3A1Q15459 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SF3A1Q15459 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.61□□□□□ -1.67
SF3A1Q15459 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SF3A1Q15459 NCAPGP1-201ENST00000505112 1814 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SF3A1Q15459 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SF3A1Q15459 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.6□□□□□ -1.67
SF3A1Q15459 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SF3A1Q15459 RNU6-884P-201ENST00000363889 107 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 RNU6-82P-201ENST00000363970 107 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 RNU6-522P-201ENST00000364497 107 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 SNORA57.1-201ENST00000391227 145 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 AC099548.1-201ENST00000421443 426 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 AC007389.2-201ENST00000434630 306 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.6□□□□□ -1.67
SF3A1Q15459 HMGB3P8-201ENST00000449709 577 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 RNU7-167P-201ENST00000459160 62 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 snoU13.28-201ENST00000459235 104 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
SF3A1Q15459 RPL21P93-201ENST00000480465 489 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 HMGB1P30-201ENST00000492455 606 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 RNU6-572P-201ENST00000516724 80 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 AC009902.1-201ENST00000519351 183 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 AP003730.1-201ENST00000524605 285 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 CYCSP29-201ENST00000533731 318 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 HIGD1AP1-201ENST00000550979 275 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 OR11H5P-201ENST00000554039 926 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 AC007224.1-201ENST00000564410 144 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.6□□□□□ -1.67
SF3A1Q15459 AP003122.6-201ENST00000623831 495 ntBASIC4.6□□□□□ -1.67
SF3A1Q15459 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.6□□□□□ -1.67
SF3A1Q15459 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.6□□□□□ -1.67
SF3A1Q15459 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms