Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPS3AP12-201ENST00000443616 753 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.36□□□□□ -1.71
RNF4P78317 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.36□□□□□ -1.71
RNF4P78317 AL583843.1-201ENST00000456070 346 ntBASIC4.36□□□□□ -1.71
RNF4P78317 RPL12P20-201ENST00000475538 479 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.36□□□□□ -1.71
RNF4P78317 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
RNF4P78317 SCARNA15.2-201ENST00000516409 127 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.36□□□□□ -1.71
RNF4P78317 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.36□□□□□ -1.71
RNF4P78317 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.36□□□□□ -1.71
RNF4P78317 MED28P6-201ENST00000558776 231 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.36□□□□□ -1.71
RNF4P78317 CPDP1-201ENST00000579660 283 ntBASIC4.36□□□□□ -1.71
RNF4P78317 RN7SL690P-201ENST00000582087 240 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AC005357.1-201ENST00000588399 301 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.36□□□□□ -1.71
RNF4P78317 SNRPGP15-201ENST00000600149 222 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AC016727.2-201ENST00000603988 621 ntBASIC4.36□□□□□ -1.71
RNF4P78317 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.36□□□□□ -1.71
RNF4P78317 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.36□□□□□ -1.71
RNF4P78317 A2MP1-204ENST00000566278 4130 ntBASIC4.36□□□□□ -1.71
RNF4P78317 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
RNF4P78317 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
RNF4P78317 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
RNF4P78317 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.35□□□□□ -1.71
RNF4P78317 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.35□□□□□ -1.71
RNF4P78317 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.35□□□□□ -1.71
RNF4P78317 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.35□□□□□ -1.71
RNF4P78317 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
RNF4P78317 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
RNF4P78317 RPL9P7-201ENST00000330965 580 ntBASIC4.35□□□□□ -1.71
RNF4P78317 U8.8-201ENST00000365399 135 ntBASIC4.35□□□□□ -1.71
RNF4P78317 RNU6-827P-201ENST00000365553 106 ntBASIC4.35□□□□□ -1.71
RNF4P78317 Y_RNA.461-201ENST00000384263 103 ntBASIC4.35□□□□□ -1.71
RNF4P78317 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
RNF4P78317 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
RNF4P78317 AP000580.1-201ENST00000404439 358 ntBASIC4.35□□□□□ -1.71
RNF4P78317 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.35□□□□□ -1.71
RNF4P78317 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.35□□□□□ -1.71
RNF4P78317 AC009310.1-201ENST00000414414 451 ntBASIC4.35□□□□□ -1.71
RNF4P78317 MYL8P-204ENST00000431574 518 ntBASIC4.35□□□□□ -1.71
RNF4P78317 RPS6P12-201ENST00000432491 726 ntBASIC4.35□□□□□ -1.71
RNF4P78317 AL513043.1-201ENST00000439124 535 ntBASIC4.35□□□□□ -1.71
RNF4P78317 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.35□□□□□ -1.71
RNF4P78317 FABP5P15-201ENST00000453566 214 ntBASIC4.35□□□□□ -1.71
RNF4P78317 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.35□□□□□ -1.71
RNF4P78317 RNU6-1037P-201ENST00000459571 107 ntBASIC4.35□□□□□ -1.71
RNF4P78317 RPL9P9-202ENST00000466501 579 ntBASIC4.35□□□□□ -1.71
RNF4P78317 HMGB1P22-201ENST00000505315 124 ntBASIC4.35□□□□□ -1.71
RNF4P78317 HMGB3P16-201ENST00000508037 287 ntBASIC4.35□□□□□ -1.71
RNF4P78317 RNY3P15-201ENST00000516297 97 ntBASIC4.35□□□□□ -1.71
RNF4P78317 SNORA40.14-201ENST00000516543 86 ntBASIC4.35□□□□□ -1.71
RNF4P78317 RNU7-4P-201ENST00000516961 62 ntBASIC4.35□□□□□ -1.71
RNF4P78317 HIGD1AP5-201ENST00000529959 259 ntBASIC4.35□□□□□ -1.71
RNF4P78317 AP000889.1-201ENST00000530968 660 ntBASIC4.35□□□□□ -1.71
RNF4P78317 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.35□□□□□ -1.71
RNF4P78317 BNIP3P1-201ENST00000547295 580 ntBASIC4.35□□□□□ -1.71
RNF4P78317 AC004584.2-201ENST00000570407 410 ntBASIC4.35□□□□□ -1.71
RNF4P78317 HMGB2P1-201ENST00000591146 634 ntBASIC4.35□□□□□ -1.71
RNF4P78317 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.35□□□□□ -1.71
RNF4P78317 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.35□□□□□ -1.71
RNF4P78317 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
RNF4P78317 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
RNF4P78317 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.35□□□□□ -1.71
RNF4P78317 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.35□□□□□ -1.71
RNF4P78317 SALL4P2-201ENST00000423288 2910 ntBASIC4.35□□□□□ -1.71
RNF4P78317 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
RNF4P78317 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
RNF4P78317 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
RNF4P78317 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.34□□□□□ -1.71
RNF4P78317 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.34□□□□□ -1.71
RNF4P78317 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.34□□□□□ -1.71
RNF4P78317 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
RNF4P78317 MIR412-201ENST00000362142 91 ntBASIC4.34□□□□□ -1.71
RNF4P78317 Y_RNA.222-201ENST00000364264 102 ntBASIC4.34□□□□□ -1.71
RNF4P78317 RN7SKP227-201ENST00000364445 330 ntBASIC4.34□□□□□ -1.71
RNF4P78317 SNORD14B-201ENST00000364533 90 ntBASIC4.34□□□□□ -1.71
RNF4P78317 RNU6-472P-201ENST00000384299 107 ntBASIC4.34□□□□□ -1.71
RNF4P78317 MIR192-201ENST00000384915 110 ntBASIC4.34□□□□□ -1.71
RNF4P78317 Z98745.1-201ENST00000402553 494 ntBASIC4.34□□□□□ -1.71
RNF4P78317 AL096701.2-201ENST00000416920 238 ntBASIC4.34□□□□□ -1.71
RNF4P78317 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.34□□□□□ -1.71
RNF4P78317 AC092423.1-201ENST00000430165 186 ntBASIC4.34□□□□□ -1.71
RNF4P78317 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.34□□□□□ -1.71
RNF4P78317 MTCO3P8-201ENST00000453691 755 ntBASIC4.34□□□□□ -1.71
RNF4P78317 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.34□□□□□ -1.71
RNF4P78317 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.34□□□□□ -1.71
RNF4P78317 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.34□□□□□ -1.71
RNF4P78317 AC008897.1-201ENST00000494006 347 ntBASIC4.34□□□□□ -1.71
RNF4P78317 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.34□□□□□ -1.71
RNF4P78317 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.34□□□□□ -1.71
RNF4P78317 IGHV3-76-201ENST00000522465 295 ntBASIC4.34□□□□□ -1.71
RNF4P78317 AC090281.1-201ENST00000523019 276 ntBASIC4.34□□□□□ -1.71
RNF4P78317 AC105129.1-201ENST00000560250 297 ntBASIC4.34□□□□□ -1.71
RNF4P78317 RAC1P9-201ENST00000604990 392 ntBASIC4.34□□□□□ -1.71
RNF4P78317 MTND4LP5-201ENST00000605152 292 ntBASIC4.34□□□□□ -1.71
RNF4P78317 MIR6820-201ENST00000611508 62 ntBASIC4.34□□□□□ -1.71
RNF4P78317 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
RNF4P78317 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms