Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 AC079395.1-201ENST00000510981 262 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 OR5BM1P-201ENST00000512021 366 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
FOXA1P55317 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXA1P55317 AC021451.1-201ENST00000523498 1129 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXA1P55317 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 ZKSCAN7P1-201ENST00000543668 673 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AC090888.1-201ENST00000561335 1141 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 MIR4648-201ENST00000580107 72 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXA1P55317 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXA1P55317 AL121652.1-201ENST00000608851 448 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AC107075.1-201ENST00000613695 314 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 uc_338.20-201ENST00000621563 178 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AL159972.1-201ENST00000625150 448 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AC116618.1-201ENST00000634617 774 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 SDAD1P2-201ENST00000441308 2028 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC1.82□□□□□ -2.12
FOXA1P55317 AL049641.1-201ENST00000441055 1948 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
FOXA1P55317 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.81□□□□□ -2.12
FOXA1P55317 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA1P55317 Y_RNA.192-201ENST00000363977 102 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 SNORD116.1-201ENST00000365628 92 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 SET-203ENST00000372688 801 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXA1P55317 RNU6-637P-201ENST00000384050 107 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 MIR122-201ENST00000385044 85 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AL356421.1-201ENST00000403255 413 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXA1P55317 DPH3P2-201ENST00000422618 250 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 ZYG11AP1-201ENST00000430329 837 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AL714022.1-201ENST00000439897 151 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AL353705.4-201ENST00000449661 238 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC092155.2-201ENST00000454675 477 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC116337.2-201ENST00000477662 156 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC021382.1-201ENST00000483523 359 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC007182.2-201ENST00000489251 402 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 RPS27P26-201ENST00000494583 239 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC021146.8-201ENST00000507455 733 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 RNU6-1282P-201ENST00000516735 96 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 RNU6-840P-201ENST00000517275 65 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.81□□□□□ -2.12
FOXA1P55317 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXA1P55317 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA1P55317 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXA1P55317 AC023813.2-201ENST00000564321 469 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA1P55317 AC005951.2-201ENST00000576282 495 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA1P55317 AC006270.3-201ENST00000605967 1036 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 AC109809.1-201ENST00000619665 545 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 UCA1.1-201ENST00000620952 75 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 VPS8-228ENST00000628962 207 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXA1P55317 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA1P55317 AC011477.1-204ENST00000623416 1325 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA1P55317 AC007785.2-201ENST00000598627 1916 ntBASIC1.81□□□□□ -2.12
FOXA1P55317 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA1P55317 RNU6-289P-201ENST00000364093 107 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 RNU6-114P-201ENST00000384704 105 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AL355497.1-201ENST00000406262 551 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA1P55317 RNU4-72P-201ENST00000410754 173 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 TPMTP3-201ENST00000411928 735 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC099548.1-201ENST00000421443 426 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AL365496.1-201ENST00000426885 215 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA1P55317 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXA1P55317 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA1P55317 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA1P55317 AC003989.2-201ENST00000440224 169 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 OR10R1P-201ENST00000441524 1141 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 BMI1P1-201ENST00000445879 941 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA1P55317 EEF1E1P1-201ENST00000446998 430 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 WASF1P1-201ENST00000447560 1131 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 RPL21P134-201ENST00000453468 483 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 ZNF736P4Y-201ENST00000454995 1243 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 snoU109.3-201ENST00000459477 145 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 MEMO1P3-201ENST00000459811 302 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC005410.1-202ENST00000460347 485 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 RPL23AP70-201ENST00000483361 460 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA1P55317 AC109445.1-201ENST00000512356 383 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA1P55317 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.8□□□□□ -2.12
FOXA1P55317 MIR514B-201ENST00000516774 80 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.8□□□□□ -2.12
FOXA1P55317 EEF1A1P37-201ENST00000522748 715 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 AP002748.2-201ENST00000528671 348 ntBASIC1.8□□□□□ -2.12
FOXA1P55317 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
FOXA1P55317 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXA1P55317 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA1P55317 MTCYBP23-201ENST00000558717 1102 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms