Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AL445567.2-201ENST00000618935 498 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 OR4F13P-202ENST00000560066 2054 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC068700.1-201ENST00000565862 3754 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC116096.1-201ENST00000566804 2314 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-1164P-201ENST00000364428 107 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP500-201ENST00000364486 119 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-1131P-201ENST00000364955 107 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.348-201ENST00000365403 103 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-882P-201ENST00000391025 103 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 RPS3AP2-201ENST00000407190 754 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC009963.1-201ENST00000417265 157 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC092798.1-201ENST00000458542 409 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 snoU109.2-201ENST00000459316 135 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP438-201ENST00000516561 112 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC021678.3-201ENST00000517893 476 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC090142.3-201ENST00000519012 385 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 AC137627.1-201ENST00000545761 289 ntBASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS9D1Q9Y2B5 GVINP1-202ENST00000531871 7271 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC092681.1-201ENST00000297369 291 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RNU1-150P-201ENST00000362491 162 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-527P-201ENST00000363425 104 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-640P-201ENST00000363693 105 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RNU5F-3P-201ENST00000363767 117 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RN7SKP275-201ENST00000364626 301 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.280-201ENST00000364765 112 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC068538.1-201ENST00000376856 336 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 U3.19-201ENST00000390893 196 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 SNORA26.5-201ENST00000391215 123 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC007560.1-201ENST00000426912 237 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RPL36AP39-201ENST00000445859 318 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RPS4XP13-201ENST00000483219 789 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 RPL31P13-201ENST00000484151 370 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC139453.3-201ENST00000493276 369 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 SNORA31.19-201ENST00000517079 126 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC016256.1-201ENST00000547971 354 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 MIR4311-201ENST00000580794 100 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 OR7E18P-201ENST00000592589 702 ntBASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP453-201ENST00000362503 119 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.287-201ENST00000364853 94 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-969P-201ENST00000383900 105 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-166P-201ENST00000384371 107 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 MIR1250-201ENST00000408098 113 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 AL662874.1-201ENST00000426065 230 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 RPL39P29-201ENST00000447779 157 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 FABP5P15-201ENST00000453566 214 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 RN7SL284P-201ENST00000498823 275 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 AC091874.1-201ENST00000511402 339 ntBASIC5.65□□□□□ -1.5
VPS9D1Q9Y2B5 SNORA70.20-201ENST00000516848 126 ntBASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms