Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AL390123.1-201ENST00000603216 237 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 MIR1244-1-201ENST00000612829 85 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 AL731566.2-201ENST00000618971 317 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 AC005086.4-201ENST00000623065 213 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 MIR1244-3-201ENST00000635744 85 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 MIR1244-2-201ENST00000636449 85 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 MIR4275-201ENST00000636486 87 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 MIR1244-4-202ENST00000636813 85 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 OR14L1P-202ENST00000641545 3009 ntBASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
AP4E1Q9UPM8 LINC01109-201ENST00000603837 3081 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 RNU6-398P-201ENST00000384143 109 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 RNA5SP397-201ENST00000391323 118 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 MIR1250-201ENST00000408098 113 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 RNU6-121P-201ENST00000410525 99 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AL353621.1-201ENST00000418219 243 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 CEACAMP6-201ENST00000452007 574 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 snoU13.3-201ENST00000459441 104 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 HMGN2P13-201ENST00000476476 274 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AC231760.1-201ENST00000498002 260 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 HMGB1P35-201ENST00000503360 598 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AC008958.1-201ENST00000511047 682 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 SNORA31.22-201ENST00000517204 135 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AL137100.2-201ENST00000555786 315 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AC005951.2-201ENST00000576282 495 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 CPDP1-201ENST00000579660 283 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 AC009779.6-201ENST00000603972 165 ntBASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.73□□□□□ -1.65
AP4E1Q9UPM8 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AC125257.1-201ENST00000560400 2930 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 SAR1AP2-201ENST00000392696 594 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 U3.42-201ENST00000408746 214 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RNU6-712P-201ENST00000410558 100 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RNU4-78P-201ENST00000410940 126 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RPL21P38-201ENST00000418090 167 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RPS15AP6-201ENST00000420703 385 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AL772161.1-201ENST00000439130 476 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RPL23AP93-201ENST00000440847 484 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 SUMO2P6-201ENST00000505273 288 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RNU6-911P-201ENST00000516523 104 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 Y_RNA.700-201ENST00000516806 100 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RNU6-789P-201ENST00000517105 102 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 RN7SKP234-201ENST00000517173 224 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AC034114.1-201ENST00000520293 285 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 MIR5701-3-201ENST00000578890 82 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 MIR4273-201ENST00000582824 84 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 MIR5701-1-201ENST00000585138 82 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AC123912.5-201ENST00000605470 343 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 MIR3976-201ENST00000606807 139 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 MIR5701-2-201ENST00000615634 82 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 FTX_2.1-201ENST00000618816 94 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AC140113.4-201ENST00000622087 222 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 FP236240.3-201ENST00000623061 327 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 AC139769.1-204ENST00000472297 1931 ntBASIC4.72□□□□□ -1.65
AP4E1Q9UPM8 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
AP4E1Q9UPM8 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.71□□□□□ -1.65
AP4E1Q9UPM8 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
AP4E1Q9UPM8 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.71□□□□□ -1.65
AP4E1Q9UPM8 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 RNA5SP151-201ENST00000365632 117 ntBASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 Y_RNA.416-201ENST00000384014 113 ntBASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 Y_RNA.462-201ENST00000384268 102 ntBASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 RNU6-611P-201ENST00000384276 104 ntBASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 Y_RNA.533-201ENST00000384596 114 ntBASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 Y_RNA.539-201ENST00000384635 107 ntBASIC4.71□□□□□ -1.66
AP4E1Q9UPM8 MIR659-201ENST00000384963 97 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms