Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AL133217.1-201ENST00000450980 425 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 MRPS33P3-201ENST00000513456 322 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 RNA5SP282-201ENST00000516355 108 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 RNU6-759P-201ENST00000516740 103 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AC123904.2-201ENST00000548059 300 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 DUXAP4-201ENST00000603046 613 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AP001981.2-201ENST00000603241 418 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 DPPA3P3-201ENST00000603842 430 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AC006023.1-201ENST00000603944 259 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 MIR7844-201ENST00000616161 122 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 SCARNA15.3-201ENST00000626315 122 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 SCARNA4.1-201ENST00000628597 123 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 API5P2-201ENST00000397055 1498 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 RNU5F-6P-201ENST00000362979 116 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 RNU5A-2P-201ENST00000384337 116 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 SNORD88.1-201ENST00000408684 91 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 FCF1P1-201ENST00000432690 571 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 CACYBPP2-201ENST00000453625 678 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 RPL12P25-201ENST00000455592 494 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 BZW1P2-201ENST00000473537 826 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 RPS27P26-201ENST00000494583 239 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC112204.1-201ENST00000502591 103 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 ARL4AP2-201ENST00000507378 601 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AF131216.2-201ENST00000512316 564 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC114797.1-201ENST00000514003 728 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 RN7SKP282-201ENST00000516824 299 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 RNU6-232P-201ENST00000517144 64 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AL391261.3-201ENST00000557194 520 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 MIR4672-201ENST00000583126 81 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC008739.2-201ENST00000597006 317 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC121334.2-201ENST00000605387 271 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AL360219.1-201ENST00000610230 366 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC034102.8-201ENST00000615146 484 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AP003399.1-201ENST00000637534 361 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 AC010149.2-201ENST00000637608 315 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 PABPC1P9-201ENST00000426076 1612 ntBASIC2.66□□□□□ -1.98
LHX3Q9UBR4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
LHX3Q9UBR4 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RNU6-1167P-201ENST00000363227 94 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 Y_RNA.111-201ENST00000363248 100 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RNY3P13-201ENST00000365542 102 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 MIR767-201ENST00000390228 109 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 MIR888-201ENST00000401186 77 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AL139039.1-201ENST00000401900 692 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 MTCYBP36-201ENST00000404146 440 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 ART2BP-201ENST00000453501 499 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RPL37P6-201ENST00000460682 294 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RPL30P6-201ENST00000475925 342 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RN7SL297P-201ENST00000483161 293 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RN7SL432P-201ENST00000484057 298 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RPF2P2-201ENST00000504693 896 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC096725.1-201ENST00000514266 313 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC090136.1-201ENST00000520009 240 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC010653.1-201ENST00000571108 881 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 MIR3162-201ENST00000581818 82 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AL391813.2-201ENST00000609113 322 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC108747.1-201ENST00000609508 535 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC079248.2-201ENST00000623779 326 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 AC120349.3-201ENST00000624377 529 ntBASIC2.65□□□□□ -1.99
LHX3Q9UBR4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
LHX3Q9UBR4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms