Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC019097.1-201ENST00000424783 735 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC063976.3-201ENST00000426849 329 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.38□□□□□ -2.03
PKNOX1P55347 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.38□□□□□ -2.03
PKNOX1P55347 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.38□□□□□ -2.03
PKNOX1P55347 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.38□□□□□ -2.03
PKNOX1P55347 AC104389.3-201ENST00000445629 235 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AL606662.1-201ENST00000445763 553 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.38□□□□□ -2.03
PKNOX1P55347 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.38□□□□□ -2.03
PKNOX1P55347 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.38□□□□□ -2.03
PKNOX1P55347 MRPS17P3-201ENST00000465453 385 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 RPL23AP45-201ENST00000476406 468 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
PKNOX1P55347 AC097462.2-201ENST00000504623 481 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC114786.4-201ENST00000508771 728 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 MTND5P13-201ENST00000513046 1079 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC114797.1-201ENST00000514003 728 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 RN7SKP24-201ENST00000515888 284 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 SNORA31.11-201ENST00000516528 139 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 RNU6-64P-201ENST00000517119 105 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.38□□□□□ -2.03
PKNOX1P55347 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.38□□□□□ -2.03
PKNOX1P55347 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 VN1R90P-201ENST00000595717 726 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC018714.1-201ENST00000605028 208 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 MTND4LP5-201ENST00000605152 292 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC245517.5-201ENST00000611529 162 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AC079395.3-201ENST00000615161 484 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 AL136313.1-201ENST00000624804 202 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.38□□□□□ -2.03
PKNOX1P55347 PABPC1P9-201ENST00000426076 1612 ntBASIC2.38□□□□□ -2.03
PKNOX1P55347 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
PKNOX1P55347 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
PKNOX1P55347 GNG5P1-201ENST00000255500 204 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
PKNOX1P55347 MIR21-201ENST00000362134 72 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 SNORA72.3-201ENST00000365074 132 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.37□□□□□ -2.03
PKNOX1P55347 SET-203ENST00000372688 801 ntTSL 2 BASIC2.37□□□□□ -2.03
PKNOX1P55347 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.37□□□□□ -2.03
PKNOX1P55347 MIR34A-201ENST00000385130 110 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 U3.37-201ENST00000408528 213 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 HMGB1P11-201ENST00000413899 637 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 RPS24P7-201ENST00000416921 246 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 VPS26BP1-201ENST00000417155 755 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC244035.1-201ENST00000430042 390 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 ARL5AP4-201ENST00000430731 512 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC009296.1-201ENST00000443146 155 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.37□□□□□ -2.03
PKNOX1P55347 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 RPS15AP27-201ENST00000449183 343 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 RPL36AP51-201ENST00000487216 318 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AL160314.1-201ENST00000490836 438 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
PKNOX1P55347 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.37□□□□□ -2.03
PKNOX1P55347 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 AP003467.2-201ENST00000520175 319 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 GTF3AP2-201ENST00000557014 266 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 MIR4307-201ENST00000582802 84 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC068790.3-201ENST00000602988 553 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC025588.2-201ENST00000604851 466 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC105148.1-201ENST00000604961 409 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC067747.1-201ENST00000608026 250 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 AC011890.2-201ENST00000613393 294 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.37□□□□□ -2.03
PKNOX1P55347 AC091965.5-201ENST00000624785 342 ntBASIC2.37□□□□□ -2.03
PKNOX1P55347 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.37□□□□□ -2.03
PKNOX1P55347 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.37□□□□□ -2.03
PKNOX1P55347 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.36□□□□□ -2.03
PKNOX1P55347 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
PKNOX1P55347 RNU6-884P-201ENST00000363889 107 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 SNORA68.1-201ENST00000364537 132 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 SNORA48.2-201ENST00000390926 124 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 RNU2-52P-201ENST00000410680 190 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.36□□□□□ -2.03
PKNOX1P55347 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC2.36□□□□□ -2.03
PKNOX1P55347 RPS15AP7-201ENST00000439294 405 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.36□□□□□ -2.03
PKNOX1P55347 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.36□□□□□ -2.03
PKNOX1P55347 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.36□□□□□ -2.03
PKNOX1P55347 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.36□□□□□ -2.03
PKNOX1P55347 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
PKNOX1P55347 AC013267.1-201ENST00000458227 267 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 RPS3AP14-201ENST00000483907 780 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.36□□□□□ -2.03
PKNOX1P55347 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.36□□□□□ -2.03
PKNOX1P55347 MRPS36P2-201ENST00000512569 299 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 AC112673.1-201ENST00000513168 575 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.36□□□□□ -2.03
PKNOX1P55347 RNA5SP320-201ENST00000516263 124 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 RNA5SP82-201ENST00000516707 92 ntBASIC2.36□□□□□ -2.03
PKNOX1P55347 AC022634.1-201ENST00000520765 532 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms