Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 ST13P20-201ENST00000447996 1065 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 CECR9-201ENST00000453421 199 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD13P35453 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD13P35453 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD13P35453 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD13P35453 RNU6-677P-201ENST00000516914 101 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AP003122.4-201ENST00000530980 758 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AP002453.2-201ENST00000533503 320 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD13P35453 NACAP3-201ENST00000552100 481 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AL391261.3-201ENST00000557194 520 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 BNIP3P9-201ENST00000603714 553 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AC007363.1-201ENST00000604736 620 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AC008498.1-201ENST00000613012 531 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AC025594.3-201ENST00000613068 790 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AP001506.1-201ENST00000615444 211 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 ATP5A1P2-202ENST00000616464 443 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 AC110079.1-202ENST00000635213 138 ntBASIC3.27□□□□□ -1.89
HOXD13P35453 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD13P35453 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
HOXD13P35453 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD13P35453 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD13P35453 U3.4-201ENST00000363352 213 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AC009518.2-201ENST00000418056 731 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 ATG3P1-201ENST00000419507 911 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD13P35453 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD13P35453 HMGB3P12-201ENST00000438745 556 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 PGBD4P3-201ENST00000440731 581 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AL136380.1-201ENST00000447970 162 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 RPS27AP8-201ENST00000452665 445 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 MRPS17P3-201ENST00000465453 385 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 RN7SL633P-201ENST00000488974 297 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 RPL39P36-201ENST00000490784 156 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD13P35453 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
HOXD13P35453 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD13P35453 RAC1P5-201ENST00000512182 576 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 RNA5SP471-201ENST00000516971 106 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXD13P35453 SUB1P1-201ENST00000524415 382 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AC137800.2-201ENST00000574375 120 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AC005771.1-201ENST00000585581 349 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 NRBF2P1-201ENST00000587407 859 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AC005498.1-201ENST00000592125 465 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXD13P35453 AL365204.3-201ENST00000612448 685 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 AL603839.4-201ENST00000624658 1005 ntBASIC3.26□□□□□ -1.89
HOXD13P35453 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD13P35453 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD13P35453 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD13P35453 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXD13P35453 RNU5E-1-201ENST00000362477 120 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 NDUFS5P4-201ENST00000412983 318 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 SDCBPP3-201ENST00000419629 891 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 RPL7P46-201ENST00000425129 740 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 ISCA1P1-201ENST00000426679 387 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AL365496.1-201ENST00000426885 215 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD13P35453 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD13P35453 HMGB1P9-201ENST00000429856 646 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 RPL36AP53-201ENST00000432891 316 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD13P35453 RPS29P6-201ENST00000438196 145 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AC093392.2-201ENST00000450682 337 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 RNA5SP385-201ENST00000515947 110 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 Y_RNA.688-201ENST00000516565 95 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 RNA5SP165-201ENST00000517142 115 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AC009812.2-201ENST00000517657 457 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXD13P35453 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.25□□□□□ -1.89
HOXD13P35453 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD13P35453 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD13P35453 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD13P35453 CLIC4P2-201ENST00000601934 717 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 AL355598.1-201ENST00000604169 202 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AC007619.2-201ENST00000605743 379 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AP002360.4-201ENST00000606980 481 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 AC131902.3-201ENST00000611767 581 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 DUSP12P1-201ENST00000612874 516 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.25□□□□□ -1.89
HOXD13P35453 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD13P35453 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD13P35453 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD13P35453 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD13P35453 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD13P35453 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD13P35453 ELL2P3-201ENST00000457883 1602 ntBASIC3.24□□□□□ -1.89
HOXD13P35453 MIR422A-201ENST00000362286 90 ntBASIC3.24□□□□□ -1.89
HOXD13P35453 SNORA71.1-201ENST00000364523 117 ntBASIC3.24□□□□□ -1.89
HOXD13P35453 RNY4P34-201ENST00000364779 95 ntBASIC3.24□□□□□ -1.89
HOXD13P35453 RNA5SP274-201ENST00000410484 108 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms