Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU6-474P-201ENST00000384243 107 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 MIR320B1-201ENST00000390209 79 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
COL3A1P02461 AL583834.1-201ENST00000406943 343 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 EEF1A1P41-201ENST00000414667 207 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 RPL32P35-201ENST00000415214 394 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 RPL36AP53-201ENST00000432891 316 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 AC016691.1-201ENST00000441321 413 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.93□□□□□ -1.78
COL3A1P02461 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.93□□□□□ -1.78
COL3A1P02461 AC022861.1-201ENST00000522981 663 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.93□□□□□ -1.78
COL3A1P02461 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.93□□□□□ -1.78
COL3A1P02461 AC090502.2-201ENST00000549267 280 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.93□□□□□ -1.78
COL3A1P02461 SNRPGP17-201ENST00000603780 214 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 AC006023.1-201ENST00000603944 259 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 AP001521.1-201ENST00000609150 300 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.93□□□□□ -1.78
COL3A1P02461 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.93□□□□□ -1.78
COL3A1P02461 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.93□□□□□ -1.78
COL3A1P02461 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL3A1P02461 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL3A1P02461 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL3A1P02461 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL3A1P02461 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL3A1P02461 MTND4P35-201ENST00000604257 1375 ntBASIC3.93□□□□□ -1.78
COL3A1P02461 OR5J1P-201ENST00000313544 939 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 NACAP2-201ENST00000318548 624 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 RNA5SP383-201ENST00000362934 120 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 RNU6-289P-201ENST00000364093 107 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 SNORD42.2-201ENST00000365570 69 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 Y_RNA.579-201ENST00000390939 94 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 RNU2-62P-201ENST00000410868 191 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.92□□□□□ -1.78
COL3A1P02461 MTCO2P27-201ENST00000420740 428 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 BEND7P1-201ENST00000422058 457 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC105402.2-201ENST00000438503 358 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 HMGB1P18-201ENST00000438801 619 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 SNORD19B-201ENST00000459623 84 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AL163540.1-201ENST00000485382 386 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.92□□□□□ -1.78
COL3A1P02461 HIGD1AP13-201ENST00000509878 289 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 RNU6-201P-201ENST00000517100 61 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 IGKV2D-23-201ENST00000518179 286 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC079600.2-201ENST00000550076 130 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.92□□□□□ -1.78
COL3A1P02461 H3F3AP1-201ENST00000559984 334 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 CYCSP39-201ENST00000565821 309 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC024153.1-201ENST00000603103 365 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC124303.1-201ENST00000605703 360 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 LINC00901.1-201ENST00000617252 152 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC007792.1-201ENST00000623023 402 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC006386.2-201ENST00000624491 75 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC012005.1-201ENST00000624575 75 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.92□□□□□ -1.78
COL3A1P02461 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL3A1P02461 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL3A1P02461 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL3A1P02461 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
COL3A1P02461 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL3A1P02461 RNU6-777P-201ENST00000364265 104 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 Y_RNA.259-201ENST00000364619 101 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 Y_RNA.401-201ENST00000383965 117 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 RPL5P18-201ENST00000406671 891 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 RNU2-28P-201ENST00000410457 189 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC009310.1-201ENST00000414414 451 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.92□□□□□ -1.78
COL3A1P02461 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.92□□□□□ -1.78
COL3A1P02461 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.92□□□□□ -1.78
COL3A1P02461 AL590639.1-201ENST00000456484 337 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 MTCO2P29-201ENST00000465212 189 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 KLHL2P1-201ENST00000508691 521 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC107953.1-201ENST00000522216 297 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.92□□□□□ -1.78
COL3A1P02461 OR5B19P-201ENST00000531766 928 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.92□□□□□ -1.78
COL3A1P02461 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC011373.1-201ENST00000607270 237 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.92□□□□□ -1.78
COL3A1P02461 AL355472.4-201ENST00000610233 626 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.92□□□□□ -1.78
COL3A1P02461 AC010149.2-201ENST00000637608 315 ntBASIC3.92□□□□□ -1.78
COL3A1P02461 AP002907.1-201ENST00000606361 1430 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL3A1P02461 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
COL3A1P02461 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL3A1P02461 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL3A1P02461 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC3.91□□□□□ -1.78
COL3A1P02461 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.91□□□□□ -1.78
COL3A1P02461 MIR369-201ENST00000362155 70 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 RNA5SP502-201ENST00000362694 119 ntBASIC3.91□□□□□ -1.78
COL3A1P02461 RNU6-43P-201ENST00000384302 107 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms