Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AL353777.1-201ENST00000425552 326 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC098831.1-201ENST00000440661 216 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC022795.1-201ENST00000473808 480 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RPL31P61-201ENST00000496160 376 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 EIF4EP3-201ENST00000498782 656 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC023141.12-201ENST00000512399 199 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNU6-976P-201ENST00000516086 111 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNA5SP208-201ENST00000516156 78 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AP003181.2-201ENST00000528941 181 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 BX664608.1-201ENST00000610519 487 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC009318.4-201ENST00000620496 486 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 OR4G1P-203ENST00000641984 1631 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNA5SP52-201ENST00000362448 134 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNU6-1120P-201ENST00000362988 108 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNU6-200P-201ENST00000364743 107 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.288-201ENST00000364854 92 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNU6-730P-201ENST00000383954 104 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 PRRC2CP1-201ENST00000404428 159 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 SNORA3C-201ENST00000408792 125 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 BX323014.1-201ENST00000412876 237 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 BX842559.1-201ENST00000419615 532 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC119618.1-201ENST00000434191 222 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 TMSB4XP3-201ENST00000445144 114 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AL590664.1-201ENST00000448065 339 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RPS20P32-201ENST00000456044 356 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RNU6-1132P-201ENST00000459214 107 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC007547.1-201ENST00000462177 490 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RPL27AP5-201ENST00000469428 449 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RN7SL585P-201ENST00000470538 280 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 RPL31P50-201ENST00000471002 296 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 MTCO1P29-201ENST00000496868 288 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 MTND1P19-201ENST00000511780 315 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 SNORA40.12-201ENST00000516329 111 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.703-201ENST00000516846 111 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC022861.1-201ENST00000522981 663 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AL512643.1-201ENST00000635735 524 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 AC092435.4-201ENST00000623012 4159 ntBASIC5.58□□□□□ -1.52
COL17A1Q9UMD9 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 FTLP6-201ENST00000355274 422 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 RNU6-740P-201ENST00000364734 105 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 SNORA44-201ENST00000384584 132 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AL023807.1-201ENST00000407932 359 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AL158071.1-201ENST00000430315 461 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC002553.2-201ENST00000453217 340 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 ELOCP24-201ENST00000456370 334 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.653-201ENST00000459091 95 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC078785.3-201ENST00000476607 425 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC090453.1-201ENST00000495560 436 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AL022345.1-201ENST00000607292 135 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AL355816.1-201ENST00000607951 118 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 AC116096.1-201ENST00000566804 2314 ntBASIC5.57□□□□□ -1.52
COL17A1Q9UMD9 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 RNU6-266P-201ENST00000364225 107 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 Y_RNA.301-201ENST00000364990 103 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 U3.19-201ENST00000390893 196 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 PRELID3BP11-201ENST00000414230 479 ntBASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC5.56□□□□□ -1.52
COL17A1Q9UMD9 AC011742.1-201ENST00000431448 434 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms